| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,730,162 – 26,730,258 |
| Length | 96 |
| Max. P | 0.956087 |
| Location | 26,730,162 – 26,730,258 |
|---|---|
| Length | 96 |
| Sequences | 12 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 79.06 |
| Shannon entropy | 0.46976 |
| G+C content | 0.46180 |
| Mean single sequence MFE | -27.62 |
| Consensus MFE | -19.13 |
| Energy contribution | -18.09 |
| Covariance contribution | -1.04 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956087 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26730162 96 - 27905053 CCGGUUUGUUUGUUGCGCGCAUUAAGCUAAUUAUGGCCAAAUAAAGUGAGACGAAACGAAAAGCGCGCUUCGAGCAAACAGAGGAAUAUAUCCGAA-- ...(((((((((..((((((.....((((....))))........((........)).....))))))..)))))))))...(((.....)))...-- ( -29.70, z-score = -2.71, R) >droSim1.chr3R 26373329 96 - 27517382 CCGGUUUGUUUGUUGCGCGCAUUAAGCUAAUUAUGGCCAAAUAAAGUGAGACGAAACGAAAAGCGCGCUUCGAGCAAACAGAGGAAUAUAUCCGAA-- ...(((((((((..((((((.....((((....))))........((........)).....))))))..)))))))))...(((.....)))...-- ( -29.70, z-score = -2.71, R) >droSec1.super_4 5556366 96 - 6179234 CCGGUUUGUUUGUUGCGCGCAUUAAGCUAAUUAUGGCCAAAUAAAGUGAGACGAAACGAAAAGCGCGCUUCGAGCAAACAGAGGAAUAUAUCCGAA-- ...(((((((((..((((((.....((((....))))........((........)).....))))))..)))))))))...(((.....)))...-- ( -29.70, z-score = -2.71, R) >droYak2.chr3R 27654784 96 - 28832112 CCGGUUUGUUUGUUGCGCGCAUUAAGCUAAUUAUGGCCAAAUAAAGUGAGACGAAACGAAAAGCGCGCUACGAGCAAACAGAAGAAUAUAUCCGUA-- ...((((((((((.((((((.....((((....))))........((........)).....)))))).)))))))))).................-- ( -29.10, z-score = -2.90, R) >droEre2.scaffold_4820 9211767 96 + 10470090 CCGGUUUGUUUGUUGCGCGCAUUAAGCUAAUUAUGGCCAAAUAAAGUGAGACGAAACGAAAAGCGCGCUCCGAGCAAACAGAAGUAUAUAUCCGAG-- ...(((((((((..((((((.....((((....))))........((........)).....))))))..))))))))).................-- ( -27.90, z-score = -2.46, R) >droAna3.scaffold_12911 1142856 81 + 5364042 UCGUUUUGUUUGUUGCGCGCAUUAAGCUAAUUAUGGCCAAAUAAAGCGAGACGAAUUGAAACGCGCGCUCUAAGCAAACAG----------------- ..((((.(((((..((((((.....((((....)))).........(((......)))....))))))..)))))))))..----------------- ( -22.70, z-score = -1.02, R) >dp4.chr2 30356501 95 + 30794189 CCUGGUUGUUUGUUGUGCGCAUUAAGCUAAUUAUGGCCAAAUAAAGUGAGACGAAAGGAGACGCGCGCUCUGGGCAAAUAGCAGGGUGGAGAAGG--- ((((.(((((((((((((((.....((((....))))...................(....)))))))....)))))))))))))..........--- ( -27.70, z-score = -1.28, R) >droPer1.super_7 1222971 95 + 4445127 CCUGGUUGUUUGUUGUGCGCAUUAAGCUAAUUAUGGCCAAAUAAAGUGAGACGAAAGGAGACGCGCGCUCUGGGCAAACAGCAGGGUGGAGAAGG--- ((((.(((((((((((((((.....((((....))))...................(....)))))))....)))))))))))))..........--- ( -29.60, z-score = -1.65, R) >droWil1.scaffold_181130 10317128 96 - 16660200 UCUGGUUGUUUGUUCUGCGCAUUAAGCUAAUUAUGGCCAAAUAAAGUGAAACGAAAUGAAACGCGUGCACCGAACAAACAGCAACAUGGAACAACA-- ....((((((((((((((((.....((((....))))........(((.............))))))))..)))))))))))..............-- ( -24.32, z-score = -1.53, R) >droVir3.scaffold_13047 11577045 95 - 19223366 CCUGGUUGUUUGCUUCGCGCAUUAAGCUAAUUAUGGCCAAAUAAAGCGGCACGAAUUGAGGCGCGCGCUCUGAGCAAACAGUGGAUGCAACCGAG--- ..(((((((((((((.((((.....((((....))))........(((.(.........).)))))))...)))))))).((....)))))))..--- ( -28.50, z-score = 0.03, R) >droMoj3.scaffold_6540 3957254 84 + 34148556 CCUGGUUGUUUGCUUCGCGCAUUAAGCUAAUUAUGGCCAAAUAAAGCGGCUCGAAUCGAAGCGCGCGCUCUGUGCAAAUAGCAG-------------- ....(((((((((...((((.....((((....))))........(((..(((...)))..))))))).....)))))))))..-------------- ( -25.90, z-score = -0.29, R) >droGri2.scaffold_14624 1626996 98 - 4233967 CUGCUUUGUUUGCGUCGCGCAUUAAGCUAAUUAUGGCCAAAUAAAGCGACACGAAUUGAAACGCGCGCUCUGAGCAAACAGGCACUGGCACACAGCUG .(((((.((((((...((((.....((((....))))........(((.............))))))).....)))))))))))(((.....)))... ( -26.62, z-score = 0.31, R) >consensus CCGGUUUGUUUGUUGCGCGCAUUAAGCUAAUUAUGGCCAAAUAAAGUGAGACGAAACGAAACGCGCGCUCCGAGCAAACAGAAGAAUAUAUCCGA___ ....((((((((((..((((.....((((....))))........((...............))))))....))))))))))................ (-19.13 = -18.09 + -1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:33 2011