Locus 12242

Sequence ID dm3.chr3R
Location 26,724,738 – 26,724,797
Length 59
Max. P 0.983883
window16838

overview

Window 8

Location 26,724,738 – 26,724,797
Length 59
Sequences 10
Columns 60
Reading direction forward
Mean pairwise identity 81.04
Shannon entropy 0.40568
G+C content 0.43952
Mean single sequence MFE -13.03
Consensus MFE -9.00
Energy contribution -9.30
Covariance contribution 0.30
Combinations/Pair 1.00
Mean z-score -2.21
Structure conservation index 0.69
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.15
SVM RNA-class probability 0.983883
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 26724738 59 + 27905053
UAAUAUCGAGAGCUGUCAGAACAGCUGUCAGGAAAGAAGACACCC-UUUAGAUACACAUG
...((((((.((((((....)))))).))......((((.....)-))).))))...... ( -14.40, z-score =  -2.76, R)
>droPer1.super_7 1216315 59 - 4445127
UAAUAUCGAGAGCUGUCAUGCCAGCUGUCAGACAAAGACACACCC-CCCAGAUACACAUG
...((((...(((((......)))))(((.......)))......-....))))...... ( -10.20, z-score =  -1.80, R)
>dp4.chr2 30347675 59 - 30794189
UAAUAUCGAGAGCUGUCAUGCCAGCUGUCAGACAAAGACACACCC-CCCAGAUACACAUG
...((((...(((((......)))))(((.......)))......-....))))...... ( -10.20, z-score =  -1.80, R)
>droAna3.scaffold_12911 1134496 60 - 5364042
UAAUAUCGAAAGCUGUCAGUACAGCUGUCAGGGAAUGAGACACCCCUUUAGAUACACAUG
...((((((.((((((....)))))).))((((..........))))...))))...... ( -15.00, z-score =  -2.19, R)
>droEre2.scaffold_4820 9204758 59 - 10470090
UAAUAUCGAGAGCUGUCAGAACAGCUGUCAGAAGAGAAGACACCC-UUUAGAUACACAUG
...((((((.((((((....)))))).))......((((.....)-))).))))...... ( -14.40, z-score =  -2.97, R)
>droYak2.chr3R 27648809 59 + 28832112
UAAUAUCGAGAGCUGUCAGAACAGCUGUCAGCAAAGAAGACACCC-UUUAGAUACACAUG
...((((((.((((((....)))))).))......((((.....)-))).))))...... ( -14.40, z-score =  -3.02, R)
>droSec1.super_4 5550398 59 + 6179234
UAAUAUCGAGAGCUGUCAGAACAGCUGUCAGGAAAGAAGACACCC-UUUAGAUACACAUG
...((((((.((((((....)))))).))......((((.....)-))).))))...... ( -14.40, z-score =  -2.76, R)
>droSim1.chr3R 26366338 59 + 27517382
UAAUAUCGAGAGCUGUCAGAACAGCUGUCAGGAAAGAAGACACCC-UUUAGAUACACAUG
...((((((.((((((....)))))).))......((((.....)-))).))))...... ( -14.40, z-score =  -2.76, R)
>droWil1.scaffold_181130 10312600 58 + 16660200
UAAUAUUGAGAGCUGUCAGUGCAACUGUCAGGCAUUCUCACACAU-UCCACUUUCACAU-
......(((((((((.(((.....))).)))...)))))).....-.............- ( -11.50, z-score =  -1.22, R)
>droVir3.scaffold_13047 11572272 56 + 19223366
UAAUAUUGAGAGCUGUCAGUGCAAAUGUCAGCGGGCAAAACAC-U-UUCUCACACACG--
......(((((((((.((.......)).))))((........)-)-.)))))......-- ( -11.40, z-score =  -0.86, R)
>consensus
UAAUAUCGAGAGCUGUCAGAACAGCUGUCAGGAAAGAAGACACCC_UUUAGAUACACAUG
.......((.(((((......))))).))............................... ( -9.00 =  -9.30 +   0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:29 2011