| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,716,024 – 26,716,157 |
| Length | 133 |
| Max. P | 0.676876 |
| Location | 26,716,024 – 26,716,157 |
|---|---|
| Length | 133 |
| Sequences | 5 |
| Columns | 137 |
| Reading direction | reverse |
| Mean pairwise identity | 90.47 |
| Shannon entropy | 0.16508 |
| G+C content | 0.46404 |
| Mean single sequence MFE | -32.32 |
| Consensus MFE | -25.91 |
| Energy contribution | -26.15 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.676876 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26716024 133 - 27905053 UUCCUUCACUGCUGAACUUGAUUACUUGUUCUUUGGCGGCGGUCCACUCAAUUGCCAUAAUAUCAAUCUCGCAGCCAGACUUC---AAGUGUCAAGUGCAGUGUCUGGCUGCAAUUAACCCUCUACUACCCCAUGG- ..((..((((((...(((((((.(((((...((((((((((((.......)))))).......(......)..))))))...)---)))))))))))))))))...))............................- ( -35.60, z-score = -2.21, R) >droSim1.chr3R 26356968 133 - 27517382 UUCCUUCACUGUUGAACUUGAUUACUUGUUCUUU---GGCGGUCCACUCAAUUGCCAUAAUAUCAAUCUCGCAGCCAGACUUCAACAAGUGUCAAGUGCAGUGUCUGGCUGCAAUUAACCCUCUACUGCCCCAUAG- ..........(((((....((((...((((...(---((((((.......))))))).))))..))))..((((((((((....((.........)).....))))))))))..))))).................- ( -31.70, z-score = -1.82, R) >droSec1.super_4 5541778 133 - 6179234 UUCCUUCACUGUUGAACUUGAUUACAUGUUCUUU---GGCGGUCCACUCAAUUGCCAUAAUAUCAAUCUCGCAGCCAGACUUCAACAAGUGUCAAGUGCAGUGUCUGGCUGCAAUUAACCCUCUACUGCCCCAUAG- ..........(((((....((((..(((((...(---((((((.......))))))).))))).))))..((((((((((....((.........)).....))))))))))..))))).................- ( -32.10, z-score = -1.84, R) >droYak2.chr3R 27639837 123 - 28832112 UUCCUUCACUGUUGAACUUGAU----UGUUCUUU---GGCGGUCCACUCAAUUGCCAUAAUAUCAAUCGCGCUGCCAGACUUC---GAGUGUCAAGUGCAGUGUCUGGCUGCACUUAACCCUCUACUACCCCA---- ........(((.......((((----((.....(---((((((.......)))))))......))))))......))).....---(((.((.(((((((((.....))))))))).)).)))..........---- ( -31.82, z-score = -1.96, R) >droEre2.scaffold_4820 9195995 127 + 10470090 UUCCUUCGCUGUUGAACUUGAU----UGUUCUUU---GGCGGUCCACUCAAUUGCCAUAAUAUCAGUCUCGUUGCCAGACUUC---AAGUGUCAAGUGCAGUGUCUGGCUGCAAUUAACCCGCUACUACCCCAAUAG ........((((((.....(((----((.....(---((((((.......)))))))......)))))..((.(((((((...---.(.(((.....))).)))))))).))...................)))))) ( -30.40, z-score = -1.38, R) >consensus UUCCUUCACUGUUGAACUUGAUUAC_UGUUCUUU___GGCGGUCCACUCAAUUGCCAUAAUAUCAAUCUCGCAGCCAGACUUC___AAGUGUCAAGUGCAGUGUCUGGCUGCAAUUAACCCUCUACUACCCCAUAG_ .............((((..........))))......((((((.......))))))..............((((((((((......................))))))))))......................... (-25.91 = -26.15 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:26 2011