| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,715,086 – 26,715,178 |
| Length | 92 |
| Max. P | 0.638815 |
| Location | 26,715,086 – 26,715,178 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 70.10 |
| Shannon entropy | 0.49132 |
| G+C content | 0.34716 |
| Mean single sequence MFE | -19.48 |
| Consensus MFE | -11.25 |
| Energy contribution | -12.00 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.638815 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26715086 92 + 27905053 -AGUAACCGAUAUGAAACUAUUAGAUUUGGGCCACCUUUCUAUAGGGUGUUAAGUACAUGGAGUACUUGAAUACGUUGUCCUUCAAAUUAUAA----- -......................((...((((((((((.....))))))((((((((.....)))))))).......)))).)).........----- ( -19.60, z-score = -0.65, R) >droEre2.scaffold_4820 9195021 94 - 10470090 AGCAACACCAAAAGGAACUAUUAGUUUUGGUUCAGCUUUUUUCAGGGUGUUAAGUACUU--AAUACC--GAGACAUUGUCCUUCAAAUAAUAGCACAA .((......(((((((((((.......))))))..))))).....((((((((....))--))))))--.......................)).... ( -16.60, z-score = -0.52, R) >droSec1.super_4 5540844 93 + 6179234 GGUAACCCGAAAUAAAGAUUUUAGAUUUGGGCCACCUUUCUGCAGGGUGUUAAGUACUUUGAGUACUUGAAUACAAUGUCUUUGAAAUUAUAA----- (((..((((((.(((.....)))..))))))..)))((((.(((..(((((((((((.....))))))).))))..)))....))))......----- ( -23.20, z-score = -2.13, R) >droSim1.chr3R 26356050 81 + 27517382 ------------GGUAACUAUUAGAAGUGGACCACCUUUCUGCAGGGUGUUAAGUACUUUGAGUACUUGAAUACAAUGUCUUUGAAAUUAUAA----- ------------(((.(((......)))..)))...((((.(((..(((((((((((.....))))))).))))..)))....))))......----- ( -18.50, z-score = -1.22, R) >consensus _G_AACCCGAAAUGAAACUAUUAGAUUUGGGCCACCUUUCUGCAGGGUGUUAAGUACUUUGAGUACUUGAAUACAAUGUCCUUCAAAUUAUAA_____ ............................((((((((((.....))))))((((((((.....)))))))).......))))................. (-11.25 = -12.00 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:25 2011