| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,661,473 – 26,661,564 |
| Length | 91 |
| Max. P | 0.986555 |
| Location | 26,661,473 – 26,661,564 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 88.33 |
| Shannon entropy | 0.21489 |
| G+C content | 0.49313 |
| Mean single sequence MFE | -33.45 |
| Consensus MFE | -27.83 |
| Energy contribution | -29.47 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.68 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.24 |
| SVM RNA-class probability | 0.986555 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26661473 91 + 27905053 -------AUGUCUGAUGUCUGCUACCAGAGAUUAGACUUUGGCCUGGCCAGUUUAGGCUGGGCUUGUGGGG-AAAAUGGACCCGCUGACACAUUCACUU -------..(((((((.((((....)))).)))))))...((((..(((......)))..)))).(((((.-........))))).............. ( -36.70, z-score = -3.39, R) >droSim1.chr3R 26302381 91 + 27517382 -------AUGUCUGAUGUCUGCUACCAGAGAUUAGACUUUGGCCUGGCCAGUUUAGGCUGGGCUUGUGGGG-AAAAAAAACCCGCUGACACAUUCACUU -------..(((((((.((((....)))).)))))))...((((..(((......)))..)))).(((((.-........))))).............. ( -36.70, z-score = -3.88, R) >droSec1.super_4 5486740 91 + 6179234 -------AUGUCUGAUGUCUGCUACCAGAGAUUAGACUUUGGCCUGGCCAGUUUAGGCUGGGCUUGUGGGG-AAAAUAGACCCGCUGACACAUUCACUU -------..(((((((.((((....)))).)))))))...((((..(((......)))..)))).(((((.-........))))).............. ( -36.70, z-score = -3.56, R) >droYak2.chr3R 27583502 98 + 28832112 AUGUCUGAUGUCCGAUGUCUGCUACCAGAGAUUAGACUUUGGCCCGGCCAGUUUAGGCUGGGCUUGUGGGG-AAAAUGGACCCGCUGACACAUUCACUU .((((....(((..((.((((....)))).))..)))...(((((((((......))))))))).(((((.-........))))).))))......... ( -39.00, z-score = -3.07, R) >droEre2.scaffold_4820 9135509 91 - 10470090 -------AUGUAUGAUGUCUGCUACCAGAGAUUAGACUUUGGCCUGGCCAGUUUAGGCUGGGCUUAUGGGG-AAAAUAGACCCGCUGACACAUUCACUU -------.((.(((.((((.((...(((((......)))))(((..(((......)))..)))....(((.-........))))).))))))).))... ( -31.70, z-score = -2.63, R) >droAna3.scaffold_12911 1047598 85 - 5364042 --------------UUGUCUGCUACCAGAGAUUAGACUUUGGCCAAAGCAGCUUAGGCUCGGUUUAUGGGGGAAAAUGGACUCGCUGACACAUUCACCU --------------.((((((((.((((((......))))))....)))).....(((..(((((((........))))))).)))))))......... ( -19.90, z-score = 0.46, R) >consensus _______AUGUCUGAUGUCUGCUACCAGAGAUUAGACUUUGGCCUGGCCAGUUUAGGCUGGGCUUGUGGGG_AAAAUAGACCCGCUGACACAUUCACUU .........(((((((.((((....)))).)))))))...(((((((((......))))))))).(((((..........))))).............. (-27.83 = -29.47 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:19 2011