Locus 12231

Sequence ID dm3.chr3R
Location 26,661,012 – 26,661,065
Length 53
Max. P 0.755484
window16824

overview

Window 4

Location 26,661,012 – 26,661,065
Length 53
Sequences 6
Columns 53
Reading direction forward
Mean pairwise identity 83.90
Shannon entropy 0.30533
G+C content 0.33333
Mean single sequence MFE -9.43
Consensus MFE -7.55
Energy contribution -7.55
Covariance contribution 0.00
Combinations/Pair 1.33
Mean z-score -1.41
Structure conservation index 0.80
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.59
SVM RNA-class probability 0.755484
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 26661012 53 + 27905053
ACACGAGUAUUCAUCAAAUAAACGGUUUUAUUUAUGGCUUUAAGUUACUCCUA
....(((((..(((.(((((((....))))))))))((.....)))))))... (  -6.10, z-score =  -0.71, R)
>droSim1.chr3R 26301925 53 + 27517382
ACACGAGUAUUCAUCAAAUAAACGGUUUUGUUUAUGGCUCUGAGUGACUCCUA
....(((((((((....(((((((....))))))).....))))).))))... ( -10.80, z-score =  -1.27, R)
>droSec1.super_4 5486281 53 + 6179234
ACACGAGUAUUCAUCAAAUAAACGGUUUUGUUUAUGGCUCUGAGUGACUCCUA
....(((((((((....(((((((....))))))).....))))).))))... ( -10.80, z-score =  -1.27, R)
>droYak2.chr3R 27583026 53 + 28832112
ACACGAGUAUUCAUCAAAUAAACGGUUUUGUUUAUGGCUUUGAGUUGCUCCUA
....(((((((((....(((((((....))))))).....)))).)))))... ( -11.50, z-score =  -1.90, R)
>droEre2.scaffold_4820 9135011 53 - 10470090
ACACGAGUAUUCAUCAAAUAAACUGUUUUGUUUAUGGCUUUGAGUUACUCCUA
....(((((((((....((((((......)))))).....)))).)))))... ( -12.30, z-score =  -2.90, R)
>droAna3.scaffold_12911 1046982 53 - 5364042
ACAUGAAUAUUCAUUAAACGAGGUAACUCAUUUAUGGGCUUAAGUAAUUUUUA
.(((((((...........(((....))))))))))................. (  -5.10, z-score =  -0.39, R)
>consensus
ACACGAGUAUUCAUCAAAUAAACGGUUUUGUUUAUGGCUUUGAGUUACUCCUA
....(((((((((....((((((......)))))).....))))).))))... ( -7.55 =  -7.55 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:18 2011