| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,657,144 – 26,657,237 |
| Length | 93 |
| Max. P | 0.968137 |
| Location | 26,657,144 – 26,657,237 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.24 |
| Shannon entropy | 0.45500 |
| G+C content | 0.35903 |
| Mean single sequence MFE | -23.05 |
| Consensus MFE | -9.00 |
| Energy contribution | -9.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.93 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.79 |
| SVM RNA-class probability | 0.968137 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26657144 93 + 27905053 ----UAUUGUGUGUGUACUUAGUGGCAAUUUAU----UUGCCAUUACCUUUUGCCCG----------CAGUGUUCACUUCUGGUUUUAAAUCAAGUUUAUUAACCGGAAUC--------- ----(((((((.(((....(((((((((.....----))))))))).....))).))----------))))).....((((((((.(((((...)))))..))))))))..--------- ( -26.80, z-score = -3.97, R) >droPer1.super_7 1138292 103 - 4445127 ----UGCAUUGUGUGUACUUAGUGGCAAUUUAU----UUGCCAUUACCUUUUGCUCUGUCCACUGUUCAGUGUUCACUUCUGGUUUUAAAUCAAGUUUAUUAACCGGAAUC--------- ----.((((((.(((.((.(((((((((.....----)))))))))...........)).)))....))))))....((((((((.(((((...)))))..))))))))..--------- ( -25.90, z-score = -3.06, R) >dp4.chr2 30270278 103 - 30794189 ----UGCAUUGUGUGUACUUAGUGGCAAUUUAU----UUGCCAUUACCUUUUGCUCUGUCCACUGUUCAGUGUUCACUUCUGGUUUUAAAUCAAGUUUAUUAACCGGAAUC--------- ----.((((((.(((.((.(((((((((.....----)))))))))...........)).)))....))))))....((((((((.(((((...)))))..))))))))..--------- ( -25.90, z-score = -3.06, R) >droAna3.scaffold_12911 1043286 93 - 5364042 ----CAUUGUGUGUGUACUUAGUAGCAAUUUAU----UUGCCAUUACCUUUUGCCCG----------UAGUGUUCACUUCUGGUUUUAAAUCAAGUUUAUUAACCGGAAUC--------- ----......(((..((((((((.((((.....----)))).))))...........----------.))))..)))((((((((.(((((...)))))..))))))))..--------- ( -17.30, z-score = -1.20, R) >droEre2.scaffold_4820 9131149 97 - 10470090 ACUAUAUUGUGUGUGUACUUAGUGGCAAUUUAU----UUGCCAUUACCUUUUGCCCG----------CAGUGUUCACUUCUGGUUUUAAAUCAAGUUUAUUAACCGGAAUC--------- ...((((((((.(((....(((((((((.....----))))))))).....))).))----------))))))....((((((((.(((((...)))))..))))))))..--------- ( -27.90, z-score = -4.19, R) >droYak2.chr3R 27579204 95 + 28832112 --CAUUGUGUGUGUGUACUUAGUGGCAAUUUAU----UUGCCAUUACCUUUUGCCCG----------CAGUGUUCACUUCUGGUUUUAAAUCAAGUUUAUUAACCGGAAUC--------- --(((((((.(((......(((((((((.....----))))))))).....))).))----------))))).....((((((((.(((((...)))))..))))))))..--------- ( -28.20, z-score = -4.00, R) >droSec1.super_4 5482454 93 + 6179234 ----UAUUGUGUGUGUACUUAGUGGCAAUUUAU----UUGCCAUUACCUUUUGCCCG----------CAGUGUUCACUUCUGGUUUUAAAUCAAGUUUAUUAACCGGAAUC--------- ----(((((((.(((....(((((((((.....----))))))))).....))).))----------))))).....((((((((.(((((...)))))..))))))))..--------- ( -26.80, z-score = -3.97, R) >droSim1.chr3R 26298057 93 + 27517382 ----UAUUGUGUGUGUACUUAGUGGCAAUUUAU----UUGCCAUUACCUUUUGCCCG----------CAGUGUUCACUUCUGGUUUUAAAUCAAGUUUAUUAACCGGAAUC--------- ----(((((((.(((....(((((((((.....----))))))))).....))).))----------))))).....((((((((.(((((...)))))..))))))))..--------- ( -26.80, z-score = -3.97, R) >droVir3.scaffold_13047 11481888 90 + 19223366 --------------GUACUUAGUAGCAAUUUAU----UUGCCUCUGACUGUGUCUUUGCCA--UGCUCCUAGCUCACUUCUGGUUUUAAAUCAAGUUUAUUAACCGGAAU---------- --------------....((((..((((.....----))))..))))..(((.((..((..--.))....))..)))((((((((.(((((...)))))..)))))))).---------- ( -17.30, z-score = -1.23, R) >droMoj3.scaffold_6540 3878311 89 - 34148556 --------------GUACUUAGUAGCAAUUUAU----UUGCCUUUGCUUGUGUCUUUGCCUU---UGCUGUGCUCACUUCUGGUUUUAAAUCAAGUUUAUUAACCGGAAU---------- --------------((((.(((..((((..(((----..((....))..)))...))))..)---))..))))....((((((((.(((((...)))))..)))))))).---------- ( -19.40, z-score = -2.02, R) >droGri2.scaffold_14624 1526911 74 + 4233967 --------------AUACUUAGUAGCAAUUUAU----UUCGCACAGCUUGUCA------------------GCUCACUUCUGGUUUUAAAUCAAGUUUAUUAACCGGAAU---------- --------------.......((.((.......----...))))((((....)------------------)))...((((((((.(((((...)))))..)))))))).---------- ( -11.80, z-score = -1.26, R) >droWil1.scaffold_181130 10227236 102 + 16660200 ----UAAUGUCAAUUUAUUUAUUGACGUUUUGCCUUCUUGCCUUUACCUUUAAGCUG--------------GUUCACUUCUGGUUUUAAAUCAAGUUUAUUAACCGGAAUUGAUAUUGAU ----.(((((((((......)))))))))..(((..((((..........))))..)--------------))(((.((((((((.(((((...)))))..)))))))).)))....... ( -22.50, z-score = -3.16, R) >consensus ____UAUUGUGUGUGUACUUAGUGGCAAUUUAU____UUGCCAUUACCUUUUGCCCG__________CAGUGUUCACUUCUGGUUUUAAAUCAAGUUUAUUAACCGGAAUC_________ .............................................................................((((((((.(((((...)))))..))))))))........... ( -9.00 = -9.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:17 2011