| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,266,541 – 9,266,644 |
| Length | 103 |
| Max. P | 0.844675 |
| Location | 9,266,541 – 9,266,644 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 73.57 |
| Shannon entropy | 0.46342 |
| G+C content | 0.45240 |
| Mean single sequence MFE | -32.60 |
| Consensus MFE | -14.86 |
| Energy contribution | -13.38 |
| Covariance contribution | -1.48 |
| Combinations/Pair | 1.57 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.844675 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9266541 103 + 23011544 ----GGAGUGUUG--GGGGAU----AUGCAUGUAGUUUUUGCGUGUCGGUAGUUUGCCUGCAUCUUGAGCAGGAAAUUUACAAGAUAAUUGCUUCAGCAGUUCGGGUAGGGUA ----(((.(((((--((((((----(((((.........)))))))).((((....(((((.......)))))....))))..........)))))))).))).......... ( -33.80, z-score = -3.18, R) >droSim1.chr2L 9042811 103 + 22036055 ----GGAGUGUUG--GGGGAU----AUGCAUGUAGUUUUUGCGUGUCGGUAGUUUGCCUGCAUCUUGAGCAGGAAAUUUGCAAGAUAAUUGCUUCAACAGUUCGGGUAGGGUA ----(((.(((((--((((((----(((((.........)))))))).((((....(((((.......)))))....))))..........)))))))).))).......... ( -33.80, z-score = -3.07, R) >droSec1.super_3 4725559 103 + 7220098 ----GGAGUGUUG--GAGGAU----AUGCAUGUAGUUUUUGCGUGUCGGUAGUUUGCCUGCAUCUUGAGCAGGAAAUUUGCAAGAUAAUUGCUUCAGCAGUUCGGGUAGGGUA ----(((.(((((--((((((----(((((.........)))))))).((((....(((((.......)))))....))))..........)))))))).))).......... ( -34.60, z-score = -3.16, R) >droYak2.chr2L 11934802 107 + 22324452 ----GGAGUGUUG--GGGGAUGGAUAUGCAUGUAGUUUUUGCGUGUCGGUAGUUUGCCUGCAUCUUGAGCAGGAAAUUUGCAAGAUAAUUGCUUCAGCAGCUCGGGCAGGGUA ----.((((((((--(((....((((((((.........)))))))).((((....(((((.......)))))....))))..........)))))))).))).......... ( -33.50, z-score = -1.27, R) >droGri2.scaffold_15126 5470494 113 - 8399593 UGCAUGAUUCAUGUUGCACAUCUCCGUGCUCUUAGUUGUGUCAUUUUGCAUUUAAGUAUGUGUCAUUUGCAGCAUAAUAACGGACAAACUUUAUGACGAGAGCUGCAAGUGCG .(((((((.((((..((((......)))).(((((.((((......)))).))))))))).)))..(((((((...((((.(......).)))).......))))))))))). ( -27.30, z-score = 0.39, R) >consensus ____GGAGUGUUG__GGGGAU____AUGCAUGUAGUUUUUGCGUGUCGGUAGUUUGCCUGCAUCUUGAGCAGGAAAUUUGCAAGAUAAUUGCUUCAGCAGUUCGGGUAGGGUA .........................(((((.........)))))...........((((....(((((((..(((....((((.....)))))))....)))))))..)))). (-14.86 = -13.38 + -1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:53 2011