| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,631,615 – 26,631,710 |
| Length | 95 |
| Max. P | 0.947074 |
| Location | 26,631,615 – 26,631,710 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 68.81 |
| Shannon entropy | 0.60605 |
| G+C content | 0.51988 |
| Mean single sequence MFE | -32.10 |
| Consensus MFE | -14.63 |
| Energy contribution | -16.20 |
| Covariance contribution | 1.57 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.947074 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26631615 95 - 27905053 UACAUAUUUCGCUCUCGCUCUCUCGUGGAAUAAAUCAGUACGGCUGCGUGCGA--GUGUGUGUGUGUGGGGGAGAACGGAGGAGACAAAGAGAGCGA ........((((((((.((((((((....(((..((.(((((....)))))))--...))).....))))))))......(....)...)))))))) ( -32.90, z-score = -1.75, R) >droEre2.scaffold_4820 9105212 95 + 10470090 UACAUAUUUCGCUCUCGCUCUCUCGUGGAAUAAAUCUGUACG--UGUGUGCGGGUGUGUGUGUUUGUGGGGGAGAGCGGAGGAGACAAAGAGAGCGA ........((((((((((((((((.(((((((.((((((((.--...)))))))).....))))).)).))))))))...(....)...)))))))) ( -40.30, z-score = -4.77, R) >droSec1.super_4 5457879 95 - 6179234 UACAUAUUUCGCUCUCGCUCUCUCGUGGAAUAAAUCAGUACGUCUGCGUGCGA--GUGUGUGUGUGUGGGGGAGAACGGAGGAGACAAAGAGAGCGA ........((((((((.((((((((....(((..((.(((((....)))))))--...))).....))))))))......(....)...)))))))) ( -33.70, z-score = -2.04, R) >droSim1.chr3R 26272651 97 - 27517382 UACAUAUUUCGCUCUCGCUCUCUCGUGGAAUAAAUCAGUACGUCUGCGUGCGAGUGUGUGUGUGUGUGGGGGAGAACGGAGGAGACAAAGAGAGCGA ........((((((((.((((((((....(((.((..(((((....)))))..))...))).....))))))))......(....)...)))))))) ( -33.10, z-score = -1.64, R) >droPer1.super_7 1101297 94 + 4445127 UACAUAUUUC--UCUCGCUCUCUCAACUAUUUCGUGUGUGUGUGUGUGAUUAGA-GUUGGAGUGUGGGAUAGAGAGGGGAUCACAGAAACAGAACAG ..(...((((--((((((.(((.(((((...(((..(......)..)))....)-))))))).))))))..))))...).................. ( -22.50, z-score = 0.43, R) >droVir3.scaffold_13047 9271490 82 - 19223366 ---------AGACUUUGAUUAGGCAGCGCCUGAAGCUGUCAGCGCGCGU------GUGUGUGUGUGCAGGAGAGCAAGCGAGAGCGAGCGAGAGCGG ---------.........((((((...)))))).(((.((.(((((((.------.....)))))))......((..((....))..)))).))).. ( -30.10, z-score = -0.39, R) >consensus UACAUAUUUCGCUCUCGCUCUCUCGUGGAAUAAAUCAGUACGUCUGCGUGCGA__GUGUGUGUGUGUGGGGGAGAACGGAGGAGACAAAGAGAGCGA ........((((((((.(((((((...((.....)).(((((....)))))................)))))))......(....)...)))))))) (-14.63 = -16.20 + 1.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:15 2011