| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,606,511 – 26,606,664 |
| Length | 153 |
| Max. P | 0.521480 |
| Location | 26,606,511 – 26,606,664 |
|---|---|
| Length | 153 |
| Sequences | 3 |
| Columns | 163 |
| Reading direction | forward |
| Mean pairwise identity | 82.47 |
| Shannon entropy | 0.24325 |
| G+C content | 0.43240 |
| Mean single sequence MFE | -46.34 |
| Consensus MFE | -24.45 |
| Energy contribution | -27.90 |
| Covariance contribution | 3.45 |
| Combinations/Pair | 1.02 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.521480 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26606511 153 + 27905053 UCCGAGAGACUCGGUUGAUACAUAUAUACAU--------AGUUCAACCGCGU--ACUUAAGGUGAACAGUGAAAGUACCCUGAGGCCAAAGUGUACGUAGGGUGCGUAUUACUUUUAUCUCAACUACUUCUGUCGGUUUCAUCCGACUCAAAGGACCAAAACC (((.((((...(((((((.((.(((....))--------)))))))))).((--(.((.(((((((.(((((..((((((((..((......))...))))))))...)))))))))))).)).)))))))(((((......))))).....)))........ ( -44.90, z-score = -2.30, R) >droSim1.chr3R 26246878 159 + 27517382 UCCGAAAGACUCGCUUGAUACAUAUGUACAUAUGUACAUAGUUGAACCGCGUCAACUUAAGGUGAACAGUGAAAGUACCCAGAGGCAGAAGUGUA----GGGUGGGUAUUACUUUUAUCUCAACUGCUCCUCACGGGUUGAUCCGAGUCGAAGGACCAAAACC (((....(((((((((..(((.(((((((....)))))))(((((......)))))............))).))))((((.((((.((.(((...----(((((((.......)))))))..))).))))))..))))......)))))...)))........ ( -44.30, z-score = -0.93, R) >droSec1.super_4 5424574 155 + 6179234 UCUGAAAGACUCUGUUGAUACAUAUGUACAUAUGUACAUAGUUGAACCGCGUCUACUUAAGGUGAACAGUGAAAGUACCCAGAGGCUACACUUC--------UGGGUAUUACUUUUAUCUUAACUGCUUCUAUCGGUUUGAUCCGAGUCGAAGGACCAAAACC (((....(((((..........(((((((....)))))))((..(((((.......((((((((((.((((...(((((((((((.....))))--------)))))))))))))))))))))..........)))))..))..)))))...)))........ ( -49.83, z-score = -4.09, R) >consensus UCCGAAAGACUCGGUUGAUACAUAUGUACAUAUGUACAUAGUUGAACCGCGUC_ACUUAAGGUGAACAGUGAAAGUACCCAGAGGCAAAAGUGUA____GGGUGGGUAUUACUUUUAUCUCAACUGCUUCUAUCGGUUUGAUCCGAGUCGAAGGACCAAAACC (((....(((((((........(((((((....)))))))((..(((((..........(((((((.((((...((((((.......................))))))))))))))))).............)))))..)))))))))...)))........ (-24.45 = -27.90 + 3.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:14 2011