| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,592,646 – 26,592,774 |
| Length | 128 |
| Max. P | 0.698298 |
| Location | 26,592,646 – 26,592,774 |
|---|---|
| Length | 128 |
| Sequences | 6 |
| Columns | 133 |
| Reading direction | reverse |
| Mean pairwise identity | 67.63 |
| Shannon entropy | 0.61392 |
| G+C content | 0.46732 |
| Mean single sequence MFE | -33.58 |
| Consensus MFE | -17.03 |
| Energy contribution | -18.08 |
| Covariance contribution | 1.05 |
| Combinations/Pair | 1.44 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.698298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26592646 128 - 27905053 ----UGGGAGGAACAGAGAGGUGGCUAUGCUAUGCAAUGCAGGGAA-UAAUGCCAUUAUUCAAGAUCGACUGGCCGACUUUCAUGUGUGAAGAGCGUGAUAUGACCAAUAGAUAUAAGAAAUCGAAUGAUCUG ----...........(((..(((((....((.(((...))).))..-....)))))..))).((((((..(((.((....((((((.......))))))..)).)))...(((.......)))...)))))). ( -26.30, z-score = 0.69, R) >droSim1.chr3R 26233233 127 - 27517382 ----UGGGAGGAACUGAGAGGAGGCUGUGCCUCG-AGGGCAGGGAA-UAAUGCCAUUAUUCAAGAUCGACUGGCCGUCUUUCAUGCGUGAAGAGCGUGAUAUGGCCAAGAUAUAUAAGAAAUCGAAUGAUCUG ----..........((((..(((((...))))).-..((((.....-...))))....))))((((((..(((((((...((((((.......)))))).))))))).(((.........)))...)))))). ( -39.00, z-score = -1.51, R) >droSec1.super_4 5410920 127 - 6179234 ----UGGGAGGAACUGAGAGGAGGCUAUGCCCCG-AGGGCAGGGAA-UAAUGCCAUUAUUCAAGAUCGACUGGCCGUCUCUCAUGCGUGAAGAGCGUGAUAUGGCCAAGACAUAUAAGAAAUCGAAUGAUCUG ----..........((((.((.(((...))))).-..((((.....-...))))....))))((((((..(((((((...((((((.......)))))).)))))))..........(....)...)))))). ( -35.70, z-score = -0.27, R) >droYak2.chr3R 27513722 113 - 28832112 ----UGGGUGGAACAGAGAGGUGGCUAUGGCU---ACGGC-------UAUGGCCAUCAUUCAAGAUCGACUGGCCGUCUUUCAUGCGUGAACAGCGUGAUAUGGCCGAGAUAU------AAUCGAACGACCUG ----.((((.(....(((.((((((((((((.---...))-------)))))))))).)))....((((((((((((...(((((((....).)))))).)))))).))....------..)))).).)))). ( -50.70, z-score = -5.23, R) >droEre2.scaffold_4820 9063561 123 + 10470090 ----UGGGAGGAACAGAGAGGUGGCUGUGCCCCG-AAGGCAGGGAAGUGUUGCCAUUAUUCACGAUCGGCUGGCCGACUUUCAUGCGUGAACAGCGUGAUAUGGCCAAGAUAUGUACGAAAUCGAACG----- ----...........(((..(((((.(..((((.-......)))..)..).)))))..)))...(((...((((((....(((((((....).))))))..)))))).)))..((.((....)).)).----- ( -37.00, z-score = -0.24, R) >droAna3.scaffold_12911 972510 115 + 5364042 CGAACGAAAAAAGUGUAGAGAGGGACAUGCCU---AUAGCCUGGGA-UACAAUCUUACUAAAAAAUGGUACGACUAACUUG---AUUUAAAUAAUA-AAUA-AACUAAGUUCCAAAGUGAUCUG--------- .....................(((((...(((---(.....)))).-.....((.(((((.....))))).))........---............-....-......)))))...........--------- ( -12.80, z-score = 1.29, R) >consensus ____UGGGAGGAACAGAGAGGUGGCUAUGCCUCG_AAGGCAGGGAA_UAAUGCCAUUAUUCAAGAUCGACUGGCCGACUUUCAUGCGUGAAGAGCGUGAUAUGGCCAAGAUAUAUAAGAAAUCGAAUGAUCUG ...............(((.((((((..((((......))))..........)))))).))).........((((((....((((((.......))))))..)))))).......................... (-17.03 = -18.08 + 1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:11 2011