| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,580,030 – 26,580,144 |
| Length | 114 |
| Max. P | 0.870439 |
| Location | 26,580,030 – 26,580,144 |
|---|---|
| Length | 114 |
| Sequences | 11 |
| Columns | 128 |
| Reading direction | forward |
| Mean pairwise identity | 78.15 |
| Shannon entropy | 0.44474 |
| G+C content | 0.44526 |
| Mean single sequence MFE | -30.78 |
| Consensus MFE | -14.16 |
| Energy contribution | -13.88 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.870439 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26580030 114 + 27905053 AUGCAAACUUUUAUUGCGGACUAAAAUGAACUUCCGCUCGGGCAA----UGGCAA--------GGAAGUUCAUAAUUUCAGCUGAUUUGCGAAAACUUU-CGCCACAUUCGCUG-CACCCCCUCCACG ..((((.......))))(((.....(((((((((((((.......----.)))..--------)))))))))).....((((.(((..(((((....))-)))...))).))))-.......)))... ( -30.90, z-score = -2.42, R) >droSim1.chr3R 26219385 114 + 27517382 AUGCAAACUUUUAUUGCGGACUAAAAUGAACUUCCGCUCGGGCAA----UGGCAA--------GGAAGUUCAUAAUUUCAGCUGAUUUGCGAAAACUUU-CGCCACAUUCGCUG-CUCCCCCUCCACG ..((((.......))))(((.....(((((((((((((.......----.)))..--------)))))))))).....((((.(((..(((((....))-)))...))).))))-.......)))... ( -30.90, z-score = -2.36, R) >droSec1.super_4 5398538 114 + 6179234 AUGCAAACUUUUAUUGCGGACUAAAAUGAACUUCCGCUCGGGCAA----UGGCAA--------GGAAGUUCAUAAUUUCAGCUGAUUUGCGAAAACUUU-CGCCACAUUCGCUG-CUCCCCCUCCACG ..((((.......))))(((.....(((((((((((((.......----.)))..--------)))))))))).....((((.(((..(((((....))-)))...))).))))-.......)))... ( -30.90, z-score = -2.36, R) >droYak2.chr3R 27500859 111 + 28832112 AUGCAAACUUUUAUUGCAGACUAAAAUGAACUUCCGCUCGGGCAA----UGGCAA--------GGAAGUUCAUAAUUUCAGCUGAUUUGCGAAAACUUU-CGCCACAUUCGCUG-CUCCUCCACC--- .(((((.......))))).......(((((((((((((.......----.)))..--------)))))))))).....((((.(((..(((((....))-)))...))).))))-..........--- ( -28.70, z-score = -2.05, R) >droEre2.scaffold_4820 9051125 114 - 10470090 AUGCAAACUUUUAUUGCGGACUAAAAUGAACUUCCGCUCGGGCGA----UGGCAA--------GGAAGUUCAUAAUUUCAGCUGAUUUGCGAAAACUUU-CGCCACAUUCGCUG-CUCCCCCUCCGCG ...............(((((.....((((((((((......((..----..))..--------)))))))))).....((((.(((..(((((....))-)))...))).))))-.......))))). ( -34.10, z-score = -2.48, R) >droAna3.scaffold_12911 959403 113 - 5364042 AUGCAAACUUUUAUUGCGGACUAAAAUGAACUUCCGCCCGGGCAA----UGGCAA--------GGAAGUUCAUAAUUUCAGCUGAUUUGAGAAAACUUUUCGCCACAUUCGCAGGCUCCCCCGCC--- ..............((((((.....(((((((((((((.......----.)))..--------))))))))))..((((((.....))))))...............))))))(((......)))--- ( -29.00, z-score = -0.81, R) >dp4.chr2 30169520 122 - 30794189 AUGCAAACUUUUAUUGCGGACUAAAAUGAACUUCCGCCCCUGCAA----CUGCAAUGGCAAAAGGAAGUUCAUAAUUUCAGCUGAUUUAGGAAAAGUUUCUGCCACAUUCGCCCGCUACCCUCCGC-- ...............(((((.....(((((((((((((..(((..----..)))..)))....))))))))))......(((.......((((....))))((.......))..)))....)))))-- ( -30.50, z-score = -1.75, R) >droPer1.super_7 1036018 122 - 4445127 AUGCAAACUUUUAUUGCGGACUAAAAUGAACUUCCGCCCCUGCAA----CUGCAAUGGCAAAAGGAAGUUCAUAAUUUCAGCUGAUUUAGGAAAAGUUUCUGCCACAUUCGCCCGCUACCCUCCGC-- ...............(((((.....(((((((((((((..(((..----..)))..)))....))))))))))......(((.......((((....))))((.......))..)))....)))))-- ( -30.50, z-score = -1.75, R) >droWil1.scaffold_181130 10111627 123 + 16660200 AUGCAAACUUUUAUUGUGGGUUAAAAUGAACUUCCGCUGCUUCGGAGCUCUGCAGCG--AAACGGAAGUUCAUAAUUUCAGCUGAUUUGGAAAAGUUUUUGGCCAUUUUUCUCCCACUCACUACG--- ...............(((((..((((((((((((((.((((.(((....))).))))--...))))))))))).......((((((((....)))))...)))....)))..)))))........--- ( -35.50, z-score = -2.71, R) >droVir3.scaffold_13047 11379662 96 + 19223366 AUGCAAACUUUUAUUGUGGGUUAAAAUGAACUUCCGCUGG---------CUGCAGC------CGGAAGUUCAUAAUUUCAGCUGAUUUGCGAAAACUUUUG-CCACUUUUUC---------------- ...............((((......((((((((((((((.---------...))).------)))))))))))..((((.((......)))))).......-))))......---------------- ( -29.00, z-score = -3.11, R) >droGri2.scaffold_14624 1412098 103 + 4233967 AUGCAAACUUUUAUUGUGGGUUAAAAUGAACUUCCGCUGG---------CUGCAGC------CGGAAGUUCAUAAUUUCAGCUGAUUUGCAAAAACUUUUG-CCACU--UCUUCAAACUGC------- ..(((..........((((......((((((((((((((.---------...))).------))))))))))).......((......))...........-)))).--.........)))------- ( -28.55, z-score = -2.49, R) >consensus AUGCAAACUUUUAUUGCGGACUAAAAUGAACUUCCGCUCGGGCAA____UGGCAA________GGAAGUUCAUAAUUUCAGCUGAUUUGCGAAAACUUU_CGCCACAUUCGCUG_CUCCCCCUCC___ .(((((.......))))).......((((((((((............................))))))))))....................................................... (-14.16 = -13.88 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:07 2011