| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,572,446 – 26,572,539 |
| Length | 93 |
| Max. P | 0.958689 |
| Location | 26,572,446 – 26,572,539 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 71.28 |
| Shannon entropy | 0.53587 |
| G+C content | 0.49513 |
| Mean single sequence MFE | -30.84 |
| Consensus MFE | -15.77 |
| Energy contribution | -16.37 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.958689 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26572446 93 - 27905053 --GGGGUGCC--GAAAUCAAUUGGUUUUGUGCCCG--------GCAGAUGCCUUAGAUCUGCGACACG--GGCAUUGACAACCUCAACUGGACUUCAUU-UGUCCUGG- --(((((..(--((((((....)))))))((((((--------((((((.......))))))....))--))))......)))))..(.((((......-.)))).).- ( -33.70, z-score = -2.32, R) >droWil1.scaffold_181130 10095140 103 - 16660200 ---AAAUUACACUAUACAUCUAGGUUGGGGAGCAGAAACUCUAGUCUGGAGCAUUGAUUUAGUAAAAAUUGGUGUUUUAAAAUUAUGUUGGACAAUUUUAUGUCCU--- ---...............(((((..(((((........)))))..)))))((((..((((.....))))..))))..............(((((......))))).--- ( -25.20, z-score = -2.18, R) >droAna3.scaffold_12911 950469 96 + 5364042 AUGGGGUGCCCUAAAAUCAAUUGGUUUCC--CCCA--------GCAGAUGCCAUAGAUCUGCUACAAA--AUCGCUGACAGCCUCAACUGGACAUCAUU-UGUUUUAGG .........(((((((.(((.((((.(((--...(--------((((((.......))))))).....--...((.....)).......))).)))).)-))))))))) ( -24.20, z-score = -0.56, R) >droEre2.scaffold_4820 9043348 93 + 10470090 --GGGGUGCC--GAAAUCAAUUGGUUUUGUGCCCG--------GCAGAUGCCUUAGAUCUGCGACACG--GGCAUUGACAACUUCAACUGGACCCCAUU-UGUCUCGG- --(((((.((--((((((....))))))(((((((--------((((((.......))))))....))--)))))..............)))))))...-........- ( -33.50, z-score = -2.05, R) >droYak2.chr3R 27492985 99 - 28832112 --GGGGUGCC--GAAAUCAAUUGGUUUUGUGCCCG--GCAGAUGCAGAUGCCUUAGAUCUGCGACACG--GGCAUUGACAACCUCAACUGGACCUCAUU-UGUUCUAG- --(((((..(--((((((....)))))))((((((--...(.(((((((.......))))))).).))--))))......)))))..(((((.(.....-.).)))))- ( -34.20, z-score = -2.05, R) >droSec1.super_4 5390922 93 - 6179234 --GGGGUGCC--GAAAUCAAUUGGUUUCGUGCCCG--------GCAGAUGCCUUAGAUCUGCGACACG--GGCACUGACAACCUCAACUGGACCUCAUU-UGUCCUGG- --(((((...--((((((....))))))(((((((--------((((((.......))))))....))--))))).....)))))..(.((((......-.)))).).- ( -36.70, z-score = -2.94, R) >droSim1.chr3R 26211841 93 - 27517382 --GGGGUGCU--GAAAUCAAUUGGUUUCGUGCCCG--------GCCGAUGCCUUAGAUCUGCGACACG--GGCACUGACAACCUCAACUUGACCUCAUU-UGUCCUGG- --(((((...--((((((....))))))(((((((--------((.(((.......))).))....))--))))).....)))))..(..(((......-.)))..).- ( -28.40, z-score = -0.99, R) >consensus __GGGGUGCC__GAAAUCAAUUGGUUUCGUGCCCG________GCAGAUGCCUUAGAUCUGCGACACG__GGCAUUGACAACCUCAACUGGACCUCAUU_UGUCCUGG_ ..(((((.....((((((....))))))(((((..........((((((.......))))))........))))).....)))))....((((........)))).... (-15.77 = -16.37 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:03 2011