| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,565,693 – 26,565,794 |
| Length | 101 |
| Max. P | 0.888642 |
| Location | 26,565,693 – 26,565,794 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 78.12 |
| Shannon entropy | 0.37613 |
| G+C content | 0.53191 |
| Mean single sequence MFE | -31.40 |
| Consensus MFE | -23.90 |
| Energy contribution | -25.15 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.888642 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26565693 101 - 27905053 -GUUGGCGUGGUCAAAAGCCGUCUAGUCGCGUAGGUGAGUCGUAAAUUUACGCGCCAUUGUUGGCAGAUUUGGCCCAACUCCCUAAUACCUUAACCCCGGGA---------------- -(((((...(((.....)))(((.((((((((((((.........))))))))((((....)))).)))).))))))))((((...............))))---------------- ( -31.76, z-score = -1.07, R) >droSim1.chr3R 26205013 101 - 27517382 -GUUGGCCCGGUCAAAAGCCGUCUAGUCGCGUAGGUGAGUCGUAAAUUUACGCGCCAUUGUUGGCAGAUUUGGCCCAACUCCCUAAUACCUUAACCCCGGGA---------------- -(((((((((((.....))))...((((((((((((.........))))))))((((....)))).)))).)).)))))((((...............))))---------------- ( -32.16, z-score = -1.31, R) >droSec1.super_4 5384202 101 - 6179234 -GUUGGCCCGGUCAAAAGCCGUCUAGUCGCGUAGGUGAGUCGUAAAUUUACGCGCCAUUGUUGGCAGAUUUGGCCCAACUCCCUAAUACCUUAACCCCGGGA---------------- -(((((((((((.....))))...((((((((((((.........))))))))((((....)))).)))).)).)))))((((...............))))---------------- ( -32.16, z-score = -1.31, R) >droYak2.chr3R 27485797 117 - 28832112 -GUUGGCCCGGUCAAAAGCCGUCUAGUCGCGUAGGUGAGUCGUAAAUUUACGCGCCAUUGUUGGCAGAUUUGACCCAACUCCCCAACUUGCCAACUCCCUAAUUCCUUAACCCCUUGA -((((((..(((.....)))(((.((((((((((((.........))))))))((((....)))).)))).)))...............))))))....................... ( -33.10, z-score = -2.96, R) >droEre2.scaffold_4820 9036374 118 + 10470090 GGUUGGCCCGGUCAAAAGCCGUCUAGUCGCGUAGGUGAGUCGUAAAUUUACGCGCCAUUGUUGGCAGAUUUGGCCCAACUUCCCAACUUCCCAUUUCCCUAAUUCCUUAACCCCUUGA ((((((((((((.....))))...((((((((((((.........))))))))((((....)))).)))).)).))))))...................................... ( -29.60, z-score = -0.97, R) >droAna3.scaffold_12911 944579 92 + 5364042 -UUUGGCCUGGUCAGAA-UCGUCUAGUCGCGUAGGUGAGCCGUAAAUUUACGCGCCAUUGUUGGCCG-------CCCACUCCUUUGGCCGACACCCUCCUG----------------- -..((((((((.(....-..).))))..((((((((.........)))))))))))).(((((((((-------..........)))))))))........----------------- ( -29.60, z-score = -1.51, R) >consensus _GUUGGCCCGGUCAAAAGCCGUCUAGUCGCGUAGGUGAGUCGUAAAUUUACGCGCCAUUGUUGGCAGAUUUGGCCCAACUCCCUAAUACCUCAACCCCCGGA________________ .(((((...(((.....)))(((.((((((((((((.........))))))))((((....)))).)))).))))))))....................................... (-23.90 = -25.15 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:58:02 2011