| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,550,582 – 26,550,679 |
| Length | 97 |
| Max. P | 0.596073 |
| Location | 26,550,582 – 26,550,679 |
|---|---|
| Length | 97 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 72.92 |
| Shannon entropy | 0.52871 |
| G+C content | 0.44345 |
| Mean single sequence MFE | -21.04 |
| Consensus MFE | -11.12 |
| Energy contribution | -10.88 |
| Covariance contribution | -0.23 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.596073 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26550582 97 - 27905053 --AACAUGGGAGCCAAAGG---GAGAUGUAUG----------GACAAACAGAGACAAGC------AAACGGAAACGGAAACGUUUUCAGCUGUCGAAUUUGUAUGAG-UGCAUGAAAGU --..........((....)---)..((((((.----------.(((((....((((.((------....(((((((....))))))).))))))...)))))....)-)))))...... ( -24.80, z-score = -2.75, R) >droSim1.chr3R 26189957 97 - 27517382 --AACAUGGGAGCCAAAAG---GAGAUGUAUG----------GACAAACAGAGACAAGC------AAACGGAAACGGAAACGCUUUCAGCUGUCGAAUUUGUAUGAG-UGCAUGAAAGU --..........((....)---)..((((((.----------.(((((....((((.((------.....((((((....)).)))).))))))...)))))....)-)))))...... ( -21.10, z-score = -1.31, R) >droSec1.super_4 5369327 97 - 6179234 --AACAUGGGAGCCAAAGG---GAGAUGUAUG----------GACAAACAGAGACAAGC------AAACGGAAACGGAAACGCUUUCAGCUGUCGAAUUUGUAUGAG-UGCAUGAAAGU --..........((....)---)..((((((.----------.(((((....((((.((------.....((((((....)).)))).))))))...)))))....)-)))))...... ( -21.00, z-score = -1.13, R) >droYak2.chr3R 27469945 107 - 28832112 --GCCAAGGGAGCCAAAGG---GAGAUGUAUGAACAAACAGAGACAAACAGAGACAAGC------AAACGGAAACGGAAACGCUUUCAGCUGUCGAAUUUGUAUGAG-UGUAUGAAAGU --.((...(....)....)---)....(((((..((.(((((.....((((....((((------....(....)(....)))))....))))....))))).))..-)))))...... ( -20.00, z-score = -0.40, R) >droEre2.scaffold_4820 9018625 102 + 10470090 --GGCAGGGGGG-CAAUGG---GAGAUGUAUG----------GACAAACAGAGACAAGCAAACGGAAACGGAAACGGAAACGCUUUCAGCUGUCGAACUUGUAUGAG-UGCAUGAAAGU --.((......)-).....---...((((((.----------.((((.....((((.((...((....))((((((....)).)))).))))))....))))....)-)))))...... ( -26.50, z-score = -2.66, R) >droAna3.scaffold_12911 930222 105 + 5364042 AACAAAGGGGGGCCAAAGCUCUGAGAGAGAUGUAU------GGACAAACAGAGACAAGC------AAACGGAAACGGAAAUGCUUUCAGCUGUCGAAUUUGUAUGAGCCAAGAGUGC-- ......(((((((....))))).........(((.------.((...((((....((((------(..((....))....)))))....))))....))..)))...))........-- ( -22.60, z-score = -0.16, R) >dp4.chr2 30139010 93 + 30794189 -----ACGAGGAUGGGGAU--UGGGAUUUGUUAGU------GGACAAACAAAGACAAGA------AAACGGAAACGGAAACGCUUUCAGCUGUCGAAUUUGUAUGAGCUACU------- -----......(((.((((--(.((.((((((..(------(......))..)))))).------....((((.((....)).)))).....)).))))).)))........------- ( -17.40, z-score = -0.37, R) >droPer1.super_7 1005353 93 + 4445127 -----ACGAGGAUGGGGAU--UGGGAUUUGUUAGU------GGACAAACAAAGACAAGA------AAACGGAAACGGAAACGCUUUCAGCUGUCGAAUUUGUAUGAGCUACU------- -----......(((.((((--(.((.((((((..(------(......))..)))))).------....((((.((....)).)))).....)).))))).)))........------- ( -17.40, z-score = -0.37, R) >droWil1.scaffold_181130 10070398 92 - 16660200 ------AGAGAGAGAGAGC---AAGAAAUGUG----------GGCAAACAAAGGCCAAGA-----AAACGGAAACGGAAACGCUUUCAGCUGUCGAAUUUGUAUGAG-CAUACAAGC-- ------.((.((.((((((---..........----------(((........)))....-----...((....)).....))))))..)).))...(((((((...-.))))))).-- ( -24.20, z-score = -3.19, R) >droVir3.scaffold_13047 11344500 93 - 19223366 ---AAGAGCGUAGCGAAAC---GAGAAAUGUG----------GACAAACAAAGACAAGA------AAACGGAACCGGAAACGCUUUCAGCUGUCGAAUUUGUAUGAGCUGCUUGC---- ---......(((((...((---(((...(((.----------.....)))..((((.(.------....((((.((....)).))))..)))))...)))))....)))))....---- ( -19.70, z-score = -0.18, R) >droMoj3.scaffold_6540 3747323 95 + 34148556 ---AAGAGCGUAGCGAAAC---GAGAAAUGUA----------GACAAACAAAGACAAGA------AAACGGAAACGGAAACGCUUUCAGCUGUCGAAUUUGUAUGAGCUGCUUCUGC-- ---.((((.(((((...((---(((...(((.----------.....)))..((((.(.------.....((((((....)).))))..)))))...)))))....)))))))))..-- ( -21.70, z-score = -0.71, R) >droGri2.scaffold_14624 1368412 89 - 4233967 -----------AGAAAAUC---GAGAAAUGUA----------GGCAAACAAAGACAAGA------AAACGGAACCGGAAACGCUUUCAGCUGUCGAAUUUGUAUGAGCUGCCUGACUGU -----------........---........((----------(((..............------....((((.((....)).))))((((..............)))))))))..... ( -16.14, z-score = 0.18, R) >consensus ___ACAAGGGAGCCAAAGC___GAGAUAUAUG__________GACAAACAAAGACAAGC______AAACGGAAACGGAAACGCUUUCAGCUGUCGAAUUUGUAUGAG_UGCAUGAAA__ ............................................((.(((((((((............((....)).....((.....))))))...))))).)).............. (-11.12 = -10.88 + -0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:58 2011