| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,547,893 – 26,547,986 |
| Length | 93 |
| Max. P | 0.973752 |
| Location | 26,547,893 – 26,547,986 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 75.88 |
| Shannon entropy | 0.30610 |
| G+C content | 0.37897 |
| Mean single sequence MFE | -17.07 |
| Consensus MFE | -10.82 |
| Energy contribution | -10.60 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.74 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.973752 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26547893 93 + 27905053 CUAAGAUAUGUGUGUGGAAAUGGAAACGCCAGUGAAAAUGAAAAGGAAAAUGAAAAUGGAGACAUUGAGCACGUUGCUACAUUUGUCAACGAU ....((((.((((.(((....(....).)))............((.((..((..((((....))))...))..)).)))))).))))...... ( -18.40, z-score = -1.87, R) >droSim1.chr3R 26187305 71 + 27517382 --------------------CUGAGAUAU--GUGGAAAUGGAAACGAAAAUGAAAAUGGAGACAUUGAGCACGUUGCUACAUUUGUCAACGAU --------------------.(((.(.((--((((.((((....).....((..((((....))))...)).))).)))))).).)))..... ( -16.40, z-score = -3.17, R) >droSec1.super_4 5366655 71 + 6179234 --------------------CUGAGAUAU--GUGGAAAUGGAAACGAAAAUGAAAAUGGAGACAUUGAGCACGUUGCUACAUUUGUCAACGAU --------------------.(((.(.((--((((.((((....).....((..((((....))))...)).))).)))))).).)))..... ( -16.40, z-score = -3.17, R) >consensus ____________________CUGAGAUAU__GUGGAAAUGGAAACGAAAAUGAAAAUGGAGACAUUGAGCACGUUGCUACAUUUGUCAACGAU ................................((((((((..............((((....)))).(((.....))).))))).)))..... (-10.82 = -10.60 + -0.22)
| Location | 26,547,893 – 26,547,986 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 75.88 |
| Shannon entropy | 0.30610 |
| G+C content | 0.37897 |
| Mean single sequence MFE | -7.27 |
| Consensus MFE | -7.10 |
| Energy contribution | -7.10 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.68 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.740055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26547893 93 - 27905053 AUCGUUGACAAAUGUAGCAACGUGCUCAAUGUCUCCAUUUUCAUUUUCCUUUUCAUUUUCACUGGCGUUUCCAUUUCCACACACAUAUCUUAG ...(..((((..((.(((.....))))).))))..)..........................(((.....))).................... ( -7.60, z-score = 0.12, R) >droSim1.chr3R 26187305 71 - 27517382 AUCGUUGACAAAUGUAGCAACGUGCUCAAUGUCUCCAUUUUCAUUUUCGUUUCCAUUUCCAC--AUAUCUCAG-------------------- ...(..((((..((.(((.....))))).))))..)..........................--.........-------------------- ( -7.10, z-score = -1.08, R) >droSec1.super_4 5366655 71 - 6179234 AUCGUUGACAAAUGUAGCAACGUGCUCAAUGUCUCCAUUUUCAUUUUCGUUUCCAUUUCCAC--AUAUCUCAG-------------------- ...(..((((..((.(((.....))))).))))..)..........................--.........-------------------- ( -7.10, z-score = -1.08, R) >consensus AUCGUUGACAAAUGUAGCAACGUGCUCAAUGUCUCCAUUUUCAUUUUCGUUUCCAUUUCCAC__AUAUCUCAG____________________ ...(..((((..((.(((.....))))).))))..)......................................................... ( -7.10 = -7.10 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:57 2011