| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,538,531 – 26,538,608 |
| Length | 77 |
| Max. P | 0.525102 |
| Location | 26,538,531 – 26,538,608 |
|---|---|
| Length | 77 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 76.64 |
| Shannon entropy | 0.32392 |
| G+C content | 0.37619 |
| Mean single sequence MFE | -18.90 |
| Consensus MFE | -15.05 |
| Energy contribution | -14.17 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525102 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26538531 77 - 27905053 ---------------AAUUAGCUUUAGUAUUUGUGAGGUCACUCUGACCUAAAGAGGAUCUUCGAGAGCUAUGGCCUCACCGAAGUCAAUGA ---------------.(((..(((..((......((((((.((((.......)))))))))).(((.((....)))))))..)))..))).. ( -21.20, z-score = -1.32, R) >droSec1.super_4 5357488 90 - 6179234 AAUUAGCUUAUUUCAAACU--CUUUACUGCUUGUAAGAUCACUCUGACCUAAAGAGGAUCUUCGAGAGCUAUGGCCUCACUGAAUUGAAUAA .......(((.((((....--...........(.((((((.((((.......)))))))))))(((.((....)))))..)))).))).... ( -19.10, z-score = -1.38, R) >droSim1.chr3R 26178072 90 - 27517382 AAUUAGCUUAUUUCUAACU--CUUUAUUGCUUGUAAGGUUACUCUGACCUAAAGAGGAUCUUCGAGAGUUAUGGCCUCACUAAUUUCAAUAA ((((((........(((((--(((...(.(((...(((((.....)))))...))).).....))))))))........))))))....... ( -16.39, z-score = -0.45, R) >consensus AAUUAGCUUAUUUC_AACU__CUUUACUGCUUGUAAGGUCACUCUGACCUAAAGAGGAUCUUCGAGAGCUAUGGCCUCACUGAAUUCAAUAA ................................(.((((((.((((.......)))))))))))(((.((....))))).............. (-15.05 = -14.17 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:56 2011