| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,535,440 – 26,535,537 |
| Length | 97 |
| Max. P | 0.521325 |
| Location | 26,535,440 – 26,535,537 |
|---|---|
| Length | 97 |
| Sequences | 12 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 71.95 |
| Shannon entropy | 0.55102 |
| G+C content | 0.40210 |
| Mean single sequence MFE | -19.20 |
| Consensus MFE | -7.39 |
| Energy contribution | -7.47 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.521325 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26535440 97 + 27905053 ------------CCCUCUUUCAUCCUUUUG-GCCUGGCUUUCGUUUGGCCUU----UUUUUGGCGCACAUUUUAUUUUACAUAAUUUGAACAUUUAAGACGUGCCUGGGCAUAG ------------..................-(((((((...(((((.(((..----.....)))...((..((((.....))))..))........))))).))).)))).... ( -21.30, z-score = -1.31, R) >droSim1.chr3R 26174987 95 + 27517382 ------------CCCUCCUUUAUCCUUUG--GCCUGGCUUUCGUUUGGCCUU-----UUUUGGCGCACAUUUUAUUUUACAUAAUUUGAACAUUUAAGACGUGCCUGGGCAUAG ------------.................--(((((((...(((((.(((..-----....)))...((..((((.....))))..))........))))).))).)))).... ( -21.80, z-score = -1.34, R) >droSec1.super_4 5354412 95 + 6179234 ------------CCCUCCUUUAUCCUUUG--GCCUGGCUUUCGUUUGGCCUU-----UUUUGGCGCACAUUUUAUUUUACAUAAUUUGAACAUUUAAGACGUGCCUGGGCAUAG ------------.................--(((((((...(((((.(((..-----....)))...((..((((.....))))..))........))))).))).)))).... ( -21.80, z-score = -1.34, R) >droYak2.chr3R 27454475 96 + 28832112 ----------CCCA-UCCUUUAUCCUUUG--GCCUGGCUUUCGUUUGGCCUU-----UUUUGGCGCACAUUUUAUUUUACAUAAUUUGAACAUUUAAGACGUGCCUGGGCAUAG ----------((((-.............(--(((..((....))..))))..-----....(((((.((..((((.....))))..))..(......)..)))))))))..... ( -21.80, z-score = -1.24, R) >droEre2.scaffold_4820 9001002 95 - 10470090 ------------CCCUUCUUUAUCCUUUG--GCCUGGCUUUCGCUUGGCCUU-----UUUGGGCGCACAUUUUAUUUUACAUAAUUUGAACAUUUAAGACGUGCCUGGGCAUAG ------------(((.............(--(((.(((....))).))))..-----...((((((.((..((((.....))))..))..(......)..)))))))))..... ( -24.10, z-score = -1.66, R) >droAna3.scaffold_12911 911275 107 - 5364042 -------CCACCCACUCCUUUAUCCUUUUUUACUUGCCUUUCCUUGGGACUUCUUUUUUUUGGCGCACAUUUUAUUUUACAUAAUUUGAACAUUUAAGACGUGCCUGGGCAUAG -------...((((.....................(((.......(((....)))......)))((((.(((((.....((.....))......))))).)))).))))..... ( -16.32, z-score = -1.03, R) >droPer1.super_7 988200 97 - 4445127 ------------CCCUUUCCUACGCUUUUC-CCUCGUCUUGCUUUCGCCUUU----UUUUUGGCGCACAUUUUAUUUUACAUAAUUUGAACAUUUAAGACGUGCCUGGGCAUAG ------------.......(((.((((...-.(.(((((((....((((...----.....))))..((..((((.....))))..))......))))))).)...)))).))) ( -19.70, z-score = -2.62, R) >dp4.chr2 30121881 108 - 30794189 CCUUUUGCCUUUCCCUUUCCUACGCUUUUC-CCUCGUCUUGCUUUCGCCUUU----UUUU-GGCGCACAUUUUAUUUUACAUAAUUUGAACAUUUAAGACGUGCCUGGGCAUAG ...................(((.((((...-.(.(((((((....((((...----....-))))..((..((((.....))))..))......))))))).)...)))).))) ( -19.40, z-score = -2.03, R) >droWil1.scaffold_181130 10049924 89 + 16660200 -------------------------UUUUUUUUUUUUGGCGCUUUCUCUCUCUGUGCGUUGGGCUCACAUUUUAUUUUACAUAAUUUGAACAUUUAAGACGUGCCUGAGCAUAG -------------------------..........................((((((.(..(((..((.(((((.....((.....))......))))).)))))..))))))) ( -15.00, z-score = -0.61, R) >droMoj3.scaffold_6540 3724830 73 - 34148556 -----------------------------------------GCCUAGUCGUUUAUCCUUUUGGCGCACAUUUUAUUUUACAUAAUUUGAACAUUUAAGACGUGCCUGGGCAUAG -----------------------------------------((((((........((....)).((((.(((((.....((.....))......))))).)))))))))).... ( -16.40, z-score = -2.10, R) >droVir3.scaffold_13047 11326785 73 + 19223366 -----------------------------------------GCCUAGUCGUUUAUCCUUUUGGCGCACAUUUUAUUUUACAUAAUUUGAACAUUUAAGACGUGCCUGGGCAUAG -----------------------------------------((((((........((....)).((((.(((((.....((.....))......))))).)))))))))).... ( -16.40, z-score = -2.10, R) >droGri2.scaffold_14624 1344525 73 + 4233967 -----------------------------------------GCCUAGUCGUUUAUCCUUUUGGCGCACAUUUUAUUUUACAUAAUUUGAACAUUUAAGACGUGCCUGGGCAUAG -----------------------------------------((((((........((....)).((((.(((((.....((.....))......))))).)))))))))).... ( -16.40, z-score = -2.10, R) >consensus ____________CCCUCCUUUAUCCUUUU__GCCUGGCUUUCGUUUGGCCUU_____UUUUGGCGCACAUUUUAUUUUACAUAAUUUGAACAUUUAAGACGUGCCUGGGCAUAG .............................................................(((((.((..((((.....))))..))..(......)..)))))......... ( -7.39 = -7.47 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:55 2011