| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,527,169 – 26,527,269 |
| Length | 100 |
| Max. P | 0.610723 |
| Location | 26,527,169 – 26,527,269 |
|---|---|
| Length | 100 |
| Sequences | 11 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 70.11 |
| Shannon entropy | 0.58434 |
| G+C content | 0.52971 |
| Mean single sequence MFE | -29.39 |
| Consensus MFE | -14.97 |
| Energy contribution | -14.20 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.40 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.610723 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26527169 100 - 27905053 -----CGCAGCGGAGCGGAGGCGACG-------AAAUGGAAAACACACGUGGCAUGUGGCACGAUGAUAAAUCUUCGCAUUUGUGCGACACCAUAAGGGAACACAUGUCGCA -----..((.((..((....))..))-------...))..........(((((((((((((((((((.......)))...))))))....((....))...)))))))))). ( -30.50, z-score = -1.27, R) >droSim1.chr3R 26166736 100 - 27517382 -----CGCAGCGGAGCGGAGGCGACG-------AAAUGGAAAACACACGUGGCAUGUGGCACGAUGAUAAAUCUUCGCAUUUGUGCGACACCAUAAGGGAACACAUGUCGCA -----..((.((..((....))..))-------...))..........(((((((((((((((((((.......)))...))))))....((....))...)))))))))). ( -30.50, z-score = -1.27, R) >droSec1.super_4 5346099 100 - 6179234 -----CGCAGCGGAGCGGAGGCGACG-------AAAUGGAAAACACACGUGGCAUGUGGCACGAUGAUAAAUCUUCGCAUUUGUGCGACACCAUAAGGGAACACAUGUCGCA -----..((.((..((....))..))-------...))..........(((((((((((((((((((.......)))...))))))....((....))...)))))))))). ( -30.50, z-score = -1.27, R) >droEre2.scaffold_4820 8992628 100 + 10470090 -----CGCAGCGGAGCGGAGGCGACG-------AAAUGGAAAACACACGUGGCAUGUGGCACGAUGAUAAAUCUUCGCAUUUGUGCAACACCAUAAGGGAACACAUGUCGCA -----..((.((..((....))..))-------...))..........(((((((((((((((((((.......)))...))))))....((....))...)))))))))). ( -30.50, z-score = -1.52, R) >droYak2.chr3R 27445913 105 - 28832112 AAAAUCGCAGCGGAGCGGAGGCGACG-------AAAUGGAAAACACACGUGGCAUGUGGCACGAUGAUAAAUCUUCGCAUUUGUGCGACACCAUAAGGGAACACAUGUCGCA ....((.((.((..((....))..))-------...))))........(((((((((((((((((((.......)))...))))))....((....))...)))))))))). ( -31.50, z-score = -1.47, R) >droAna3.scaffold_12911 901896 107 + 5364042 -----CGCAGCGGAGCGCAGGCGACGAAAUGGAAAAUGGAAAACUCACGUGGCAUGUGGCACGAUGAUAAAUCUCCGCAUUUGUGCAACACCAUACGUGAACACAUGUCGCA -----..((.((..((....))..))...)).................((((((((((((((((((...........)).))))))..(((.....)))..)))))))))). ( -30.00, z-score = 0.09, R) >dp4.chr2 30112805 98 + 30794189 --------AGCAGCACACGUGGAGAG------GGGAGGAGAGCGACAUGCGGCAUGUGGCACGAUGAUAAAUCUCCGCAUUUGUGCGACACCAUUGGGGAACAUGUGUCGCA --------.((.(((((.(((((((.------.(..(..(.((.(((((...))))).)).)..)..)...)))))))...)))))(((((...((.....)).))))))). ( -36.20, z-score = -2.14, R) >droPer1.super_7 979036 98 + 4445127 --------AGCAGCACACGUGGAGAG------GGGAGGAGAGCGACAUGCGGCAUGUGGCACGAUGAUAAAUCUCCGCAUUUGUGCGACACCAUUGGGGAACAUGUGUCGCA --------.((.(((((.(((((((.------.(..(..(.((.(((((...))))).)).)..)..)...)))))))...)))))(((((...((.....)).))))))). ( -36.20, z-score = -2.14, R) >droWil1.scaffold_181130 10040703 91 - 16660200 ---------UGCAACCGAGGGCGAC--------ACACAUAGGUUGCAGAC-ACACGUGGCAUGAUGAUAAAUCUCUCAGUUUGUGCAACAGCA---GCAAACAUGUGUAGCA ---------(((((((...(.....--------...)...)))))))(..-((((((....(((.((......)))))((((((((....)))---.)))))))))))..). ( -26.20, z-score = -0.61, R) >droVir3.scaffold_13047 11316559 76 - 19223366 -------------------CGCAGC--------GCCCGUAA-----UGAC-ACACGUGGCACGAUGAUAAAUCUUGCGGCUUGUGCAACAGCA---GCGAACACAUGUCACA -------------------(((.((--------....((..-----((.(-(((.((.(((.(((.....))).))).)).)))))))).)).---)))............. ( -19.60, z-score = 0.81, R) >droMoj3.scaffold_6540 3713754 76 + 34148556 -------------------CGCAGC--------GCCCGUAA-----UGAC-ACACGUGGCACGAUGAUAAAUCUUGCGGCUUGUGCAACAGCA---GCGAACACAUGUCGCA -------------------.((.((--------....))..-----((.(-(((.((.(((.(((.....))).))).)).))))))...)).---((((.(....))))). ( -21.60, z-score = 0.67, R) >consensus _____CGCAGCGGAGCGGAGGCGACG_______AAAUGGAAAACACACGUGGCAUGUGGCACGAUGAUAAAUCUUCGCAUUUGUGCGACACCAUAAGGGAACACAUGUCGCA ...................................................(((((((((((((................))))))....((....))...))))))).... (-14.97 = -14.20 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:54 2011