| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,496,655 – 26,496,759 |
| Length | 104 |
| Max. P | 0.763430 |
| Location | 26,496,655 – 26,496,759 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 61.01 |
| Shannon entropy | 0.69774 |
| G+C content | 0.43695 |
| Mean single sequence MFE | -27.58 |
| Consensus MFE | -9.78 |
| Energy contribution | -10.34 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.65 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.763430 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26496655 104 - 27905053 UCCCAAUAAGCCCACCGCAGAAGUUUUGAGUAACAUAUUCCUGCUUCGAAUGCAGUUGCACUUUUUUCGGUGCAAUUUGCUUAUUCCC------GGUGGUUGGGCGCCAU- .........(((((((((.(((((...(((((...)))))..)))))(((((((((((((((......))))))).))))..))))..------.)))).))))).....- ( -37.10, z-score = -3.81, R) >droAna3.scaffold_12911 877466 95 + 5364042 ------------UUUAAAACAAAUUUUAAUUAAGAUAAGCUUCUAUAUUUUAUAG----GUUUUUUUCAGUAUAUUUCAGUGGCUCAUCGAGUGAAUGGUUGGGAGGCCGA ------------.....................((.(((..((((((...)))))----)..))).))............(((((..((((.(....).))))..))))). ( -13.30, z-score = 0.82, R) >droEre2.scaffold_4820 8969442 103 + 10470090 UUUUGAC-UUCCAAGUACUUAAGUUUUGAGUAACAUACUCCCGCUUUGAUUGCAGUUGCAUUUCUUUCGGUGCAGUUCGCUUGUGCGC------GGUGGUUGGGCGCCAU- ...((.(-.(((((.((((((.....)))))).....(..((((...........(((((((......)))))))...((....))))------))..)))))).).)).- ( -23.30, z-score = 1.07, R) >droSec1.super_4 5323150 104 - 6179234 UCCUAAUAAGCCCAUCGCAGAAGUUUUGAGAUACAUAUUUCUGAUUUGAGUGCAGUUGCAUUUUUUUCGGUGCAAUUGGAUUGUUCCC------GGUGGUUGGGCGCCCU- .........(((((((((..(((((..(((((....))))).))))).(((.((((((((((......)))))))))).)))......------.)))).))))).....- ( -30.00, z-score = -1.38, R) >droSim1.chr3R 26142686 92 - 27517382 UUCUAAUAAGCCCACCGUCGAAG------------UAUUCCUACUUUGAGUGCAGUUGCAUUUCUUUCGGUGCAACUCGCUUGUUCCC------GGUGGUUGGGCGCCAU- .........(((((((..(((((------------((....))))).(((((.(((((((((......)))))))))))))).....)------)..)).))))).....- ( -34.20, z-score = -4.02, R) >consensus UCCUAAUAAGCCCACCGCAGAAGUUUUGAGUAACAUAUUCCUGCUUUGAGUGCAGUUGCAUUUUUUUCGGUGCAAUUCGCUUGUUCCC______GGUGGUUGGGCGCCAU_ .........(((((((((.................(((((.......))))).(((((((((......)))))))))..................)))).)))))...... ( -9.78 = -10.34 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:51 2011