| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,494,962 – 26,495,057 |
| Length | 95 |
| Max. P | 0.730940 |
| Location | 26,494,962 – 26,495,057 |
|---|---|
| Length | 95 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 70.65 |
| Shannon entropy | 0.58109 |
| G+C content | 0.54912 |
| Mean single sequence MFE | -16.09 |
| Consensus MFE | -8.40 |
| Energy contribution | -8.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.730940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26494962 95 - 27905053 ------------GCGAGCCGAACAAAGAAUGUGCUUUAUUGGCACUUUUUGCACAAUUGCCGUGCCUCCCCCUCCACUUUCAUUUUCCCC-CUCUCG-ACCCCCACCCC------- ------------.((((.......(((((.(((((.....))))))))))((((.......)))).........................-..))))-...........------- ( -15.70, z-score = -2.16, R) >droEre2.scaffold_4820 8967777 94 + 10470090 ------------GCGAGCCGAACAAAGAAUGUGCUUUAUUGGCACUUUUUGCACAAUUGCCGUGCCGCCCCCUCCACUUUCA-UUUCCCC-CUCUCG-ACCCCAGCCCC------- ------------(((.((((....(((((.(((((.....))))))))))(((....))))).)))))..............-.......-......-...........------- ( -16.60, z-score = -1.29, R) >droYak2.chr3R 27419653 97 - 28832112 ------------GCGAGCCGAACAAAGAAUGUGCUUUAUUGGCACUUUUUGCACAAUUGCCGUGCCGCCCCCUCCACUUUCAUUUCCCCC-CUCCUAUACCCCCCUCUCC------ ------------(((.((((....(((((.(((((.....))))))))))(((....))))).)))))......................-...................------ ( -16.60, z-score = -2.73, R) >droSec1.super_4 5321463 95 - 6179234 ------------GCGAGCCGAACAAAGAAUGUGCUUUAUUGGCACUUUUUGCACAAUUGCCGUGCCGCCCCCUCCACUUUCAUUUUCCCC-CUCUCG-ACCCCCUCCCC------- ------------(((.((((....(((((.(((((.....))))))))))(((....))))).)))))......................-......-...........------- ( -16.60, z-score = -2.03, R) >droSim1.chr3R 26141014 95 - 27517382 ------------GCGAGCCGAACAAAGAAUGUGCUUUAUUGGCACUUUUUGCACAAUUGCCGUGCCACCCCCUCCACUUUCAUUUUCCCC-CUCUCG-ACCCCCUCCCC------- ------------.((((..(((.((.(((.(((......((((((.....(((....))).)))))).......))).))).)))))...-..))))-...........------- ( -16.42, z-score = -2.47, R) >droVir3.scaffold_13047 11287742 97 - 19223366 GCGAGUCGAAGCCGAAGCCGAACAAAGAAUGUGCUUUAUUGGCACUUUUUGCACAAUUGCCGAGC--CCCACAUGCCA-ACGCCGGCUGC-CCCA---GCUCCU------------ ..((((.(..((...(((((........(((((.....((((((.............))))))..--..)))))....-....)))))))-..).---))))..------------ ( -24.21, z-score = -0.07, R) >droMoj3.scaffold_6540 3685027 96 + 34148556 GCGAGCCGAAGCCAAAGCCGAACAAAGAAUGUGCUUUAUUGGCACUUUUUGCACAAUUGCCGAGU--CCCC---GCCCCUCGCAUGCCCCGCCCC---GCUCCA------------ (((.(.((..((..........((((((..(((((.....)))))))))))......(((.(((.--....---....)))))).))..)).).)---))....------------ ( -19.20, z-score = 0.34, R) >droGri2.scaffold_14624 1285277 97 - 4233967 GCGAGCCGAAGCCAAAGCCGAACAAAGAAUGUGCUUUAUUGGCACUUUUUGCACAAUUGCCGCCC--CCUCACAGCCACUCCCCUACCC--CCUC---AUCCCA------------ (((.((....((....))....((((((..(((((.....))))))))))).......)))))..--......................--....---......------------ ( -13.90, z-score = 0.03, R) >droWil1.scaffold_181130 10014216 99 - 16660200 ------------GCGAGCCGAACAAAGAAUGUGCUUUAUUGGCACUUUUUGCACAAUUGAAGC-CCACCUCCACAUCAGCCACAUCCCAC-CUCA---ACCUCCAUCUCCAUUUCC ------------(.(.((.((.....((.((.((((((((((((.....))).))).))))))-.))..))....)).))).).......-....---.................. ( -12.80, z-score = -0.56, R) >dp4.chr2 30086052 95 + 30794189 ------------GCGAGCCGAACAAAGAAUGUGCUUUAUUGGCACUUUUUGCACAAUUGCCGU--UGCCCCAUCAUCCCAUCCACUUUCC-CCCAACUGCCCCUUACCCC------ ------------((((......((((((..(((((.....))))))))))).....))))...--.........................-...................------ ( -11.70, z-score = -0.10, R) >droPer1.super_7 951925 95 + 4445127 ------------GCGAGCCGAACAAAGAAUGUGCUUUAUUGGCACUUUUUGCACAAUUGCCGU--UGCCCCAUCAUCCCAUCCACUUUCC-CCCAACAGCCCCUUCCCCC------ ------------((((......((((((..(((((.....))))))))))).....)))).((--((.......................-..)))).............------ ( -12.11, z-score = -0.18, R) >droAna3.scaffold_12911 875771 98 + 5364042 ------------GCGAGCCGAACAAAGAAUGUGCUUUAUUGGCACUUUUUGCACAAUUGCCGUGCCGCCCCCUCUCCAGAUUUUCACCCCGCCCAUGCACCCCUUAACCC------ ------------(((.((((....(((((.(((((.....))))))))))(((....))))).)))))......................((....))............------ ( -17.20, z-score = -1.12, R) >consensus ____________GCGAGCCGAACAAAGAAUGUGCUUUAUUGGCACUUUUUGCACAAUUGCCGUGCCGCCCCCUCCACUUUCACUUUCCCC_CCCA_G_ACCCCCUCCCC_______ ......................((((((..(((((.....)))))))))))................................................................. ( -8.40 = -8.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:50 2011