| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,485,800 – 26,485,890 |
| Length | 90 |
| Max. P | 0.882182 |
| Location | 26,485,800 – 26,485,890 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 70.16 |
| Shannon entropy | 0.55675 |
| G+C content | 0.51161 |
| Mean single sequence MFE | -26.70 |
| Consensus MFE | -16.43 |
| Energy contribution | -15.55 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.58 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.882182 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26485800 90 - 27905053 GCCAACCUCAUGACGGGCUAUCCCUCCAUCGGCUGGCUCAUGAAUUGGA-----GUUCAAAUUGGAGCCAGUCCAGGGCCAGCUGCUUAUCUCCC .........(((..(((....)))..)))((((((((((.((.(((((.-----.(((.....))).))))).)))))))))))).......... ( -29.50, z-score = -0.60, R) >droSim1.chr3R 26131610 90 - 27517382 GCCAACCUCAUGAUGGGUUAUCCCACCAUCGGUUGGCCCAUGAAUUGGA-----GUUCAAAUUGGAUCCAGUCCAGGGCCAGCUGCUUAUCUCCC .........(((.((((....)))).)))((((((((((.((.((((((-----.(((.....))))))))).)))))))))))).......... ( -34.50, z-score = -2.56, R) >droSec1.super_4 5312314 90 - 6179234 GCCAACCUCAUGAUGGGUUAUCCCACCAUCGGCUGGCCCAUGAAUUGUA-----GUUCAAAUUGGAGCCAGUCCAGGGCCAGCUGCUUAUCUCCC .........(((.((((....)))).)))((((((((((.(((((....-----)))))...((((.....)))))))))))))).......... ( -34.10, z-score = -2.66, R) >droYak2.chr3R 27410103 90 - 28832112 GCCAACCUCAUGACAGCUUAACCCACCAUCGGCUGGCUUUUGAAUUGCA-----GUUCAAAUUGGAGCCAGUCCAGGGCCAGCUGCUUAUCGCCC .........(((((((((...(((......(((((((((((((((....-----))))))....)))))))))..)))..))))).))))..... ( -27.10, z-score = -1.08, R) >droAna3.scaffold_12911 866795 78 + 5364042 -----------GCCAAUUUCUAUUUCCCUU-GUUGCCUCAUGAAUUGCA-----GUUCAAAUUGGAGUCAAGCCAGGGCCAGCUGCUUAUCGCCC -----------................(((-(...((...(((((....-----)))))....))...))))...((((.(........).)))) ( -12.60, z-score = 1.65, R) >droWil1.scaffold_181130 10003257 94 - 16660200 -AACAACUUAUGACAGGUUAACAAGUAUUGGACUGGGCUAUGAUUUAGGAGAGUGUUCAUAUUUUCUUGGAUCCAAGCCAGAUGGCAUAUCACUC -.......((((.(((..(((......)))..)))((((..((((((((((((((....))))))))))))))..))))......))))...... ( -22.40, z-score = -0.96, R) >consensus GCCAACCUCAUGACAGGUUAUCCCACCAUCGGCUGGCCCAUGAAUUGGA_____GUUCAAAUUGGAGCCAGUCCAGGGCCAGCUGCUUAUCUCCC .............................((((((((((.(((((.........))))).((((....))))...)))))))))).......... (-16.43 = -15.55 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:49 2011