| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,479,470 – 26,479,565 |
| Length | 95 |
| Max. P | 0.522676 |
| Location | 26,479,470 – 26,479,565 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 76.96 |
| Shannon entropy | 0.40295 |
| G+C content | 0.56503 |
| Mean single sequence MFE | -23.34 |
| Consensus MFE | -16.02 |
| Energy contribution | -16.02 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.522676 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26479470 95 + 27905053 UAUCUUUUAUGGCCGCGUCUGUCAUGACGACAUUAUGGCGUGGUCUGCUCCUGGUCCCCAUCCCCUCUGGCUUAUCCCAUCACCCUCUCUUCCUC ..........(((((((((((((.....))))....))))))))).(((...((.........))...)))........................ ( -19.90, z-score = -1.00, R) >droYak2.chr3R 27403570 93 + 28832112 UAUCUUUUAUGGCCGCGUCUGUCAUGACGACAUUAUGGCGUGGUCUGCUCCUGGACCCCUUCC--UUUGGCUUAUCCCAUGGCCCUCUCUCCACC ..........(((((((((((((.....))))....))))))))).......(((.....)))--...((((........))))........... ( -23.60, z-score = -1.17, R) >droSec1.super_4 5306018 85 + 6179234 UAUCUUUUAUGGCCGCGUCUGUCAUGACGACAUUAUGGCGUGGUCUGCUCCUGGUCCCCAUCC--UCUGGCUUAUCCCAUCACCCCC-------- ..........(((((((((((((.....))))....))))))))).(((...((.......))--...)))................-------- ( -20.90, z-score = -0.89, R) >droSim1.chr3R 26125368 85 + 27517382 UAUCUUUUAUGGCCGCGUCUGUCAUGACGACAUUAUGGCGUGGUCUGCUCCUGGCCCCCAUCC--UCUGGCUUAUCCCAUCACCCCC-------- ..........(((((((((((((.....))))....))))))))).......((((.......--...))))...............-------- ( -20.20, z-score = -0.52, R) >droVir3.scaffold_13047 11267563 85 + 19223366 UAUCUUUUAUGGCCGCGUCUGUCAUGACGACAUUAUGGC-CAGCACGGCACGGCCUGCUGCCCCGCCAGCCGUGAUCCGCGCCAAA--------- .........((((((((((......))))......))))-))((.(((((((((..((......))..))))))..))).))....--------- ( -32.10, z-score = -1.76, R) >consensus UAUCUUUUAUGGCCGCGUCUGUCAUGACGACAUUAUGGCGUGGUCUGCUCCUGGCCCCCAUCC__UCUGGCUUAUCCCAUCACCCCC________ ..........(((((((((((((.....))))....))))))))).(((...((.......)).....)))........................ (-16.02 = -16.02 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:47 2011