| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,453,119 – 26,453,238 |
| Length | 119 |
| Max. P | 0.606775 |
| Location | 26,453,119 – 26,453,238 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.19 |
| Shannon entropy | 0.40290 |
| G+C content | 0.35432 |
| Mean single sequence MFE | -26.14 |
| Consensus MFE | -16.75 |
| Energy contribution | -16.64 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.606775 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 26453119 119 - 27905053 -GGCAAAACAUAAUACCCAAUAAUCCGCCACGAAUUUUCCAUUCGGUGGCCUCUUUAAUUGGAAUUGAAAAUUCUUGAUUGGAACAUUUUGAAUUGAAGCAGCAAUCAAAUCGACUUUUC -.((......................(((((((((.....)))).)))))..((((((((.(((.((....((((.....)))))).))).))))))))..))................. ( -20.70, z-score = 0.12, R) >droAna3.scaffold_12911 834845 110 + 5364042 -GGGGAUACACGUUAUCU-AUAUUCCGGCAAGAAUUUUCAAUUU-UUGGCCUGUUUAA----AAUUGAAAAUUCUUGUUUGGGGCAUUUUUAACUAAAAUUAUUAUCAAUUUUUUUU--- -..........((((...-((.((((((((((((((((((((((-(..(....)..))----))))))))))))))).)))))).))...)))).......................--- ( -25.60, z-score = -3.39, R) >droEre2.scaffold_4820 8924131 113 + 10470090 --GGGAAACAUAUUACUCAAUCCUCCGCCAAGAAUUUUCAAUACGUUGCCCUCUUUAAAGGAAAUUGAAAAUUCUUGAUUGGAGCAUUUGAAAUUGAAGCAAAUAUCAAAUUUUC----- --.(....).............(((((.((((((((((((((.......(((......)))..))))))))))))))..))))).((((((.(((......))).))))))....----- ( -25.30, z-score = -2.14, R) >droYak2.chr3R 27374767 115 - 28832112 GGGGAAAACAUAUUACUCAAUCCUCCGCCAAGAAUUUUCAAUUCGUUGCCCUCUUUAAUGGAUAUUGAAAAUUCUUGAUUGGAGCAUUUGGAAUCGGAGCCGCAAUCGAAUUUUC----- (.((.......(((.((.(((.(((((.((((((((((((((((((((.......))))))))..))))))))))))..))))).))).))))).....)).)............----- ( -27.30, z-score = -0.64, R) >droSec1.super_4 5280062 119 - 6179234 -GGGAAAACAUAUUACCCAAUCCUCCGCCAGGAAUUUUCCAUUCAGUGGCCUCUUUAAUUUGAAUUGGAAAUUCUUGAUUGGAGCAUUUUGAAUUGAAGCAGCAAUCGAAUCGACUUUUC -(((...........)))(((.(((((.(((((((((((.((((((.............)))))).)))))))))))..))))).)))((((.((((........)))).))))...... ( -27.32, z-score = -0.55, R) >droSim1.chr3R 26099011 119 - 27517382 -GGGAAAACAUAUUACCCAAUCCUCCGCCAGGAAUUUUCAAUUCGGUGGCCUCUUUAAUUUGAAUUGGAAAUUCUUGAUUGGAGCAUUUUGAAUUGAAGCAGCAAUCGAAUCGACUUUUC -(((...........)))(((.(((((.((((((((((((((((((.............))))))))))))))))))..))))).)))((((.((((........)))).))))...... ( -30.62, z-score = -1.35, R) >consensus _GGGAAAACAUAUUACCCAAUCCUCCGCCAAGAAUUUUCAAUUCGGUGGCCUCUUUAAUUGGAAUUGAAAAUUCUUGAUUGGAGCAUUUUGAAUUGAAGCAGCAAUCAAAUCGACUU___ ......................(((((.(((((((((((((((...................)))))))))))))))..))))).....(((.((((........)))).)))....... (-16.75 = -16.64 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:44 2011