| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,448,459 – 26,448,550 |
| Length | 91 |
| Max. P | 0.603352 |
| Location | 26,448,459 – 26,448,550 |
|---|---|
| Length | 91 |
| Sequences | 9 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 71.21 |
| Shannon entropy | 0.54411 |
| G+C content | 0.42784 |
| Mean single sequence MFE | -17.54 |
| Consensus MFE | -9.88 |
| Energy contribution | -9.99 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.603352 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26448459 91 - 27905053 GCCAUUGUUAUUUCGCUGACAAAAGUGAAAGAUCCCAUGAUGGAUAAC------GUCUAUGUUGUUGUUUUUGUCGCCUCCU---UUUCGGCUUCGUCCU- (((.......(((((((......)))))))(((..(((((((.....)------))).)))..)))................---....)))........- ( -18.20, z-score = -0.92, R) >droSim1.chr3R 26094359 91 - 27517382 GCCAUUGUUAUUUCGCUGACAAAAGUGAAAGAUCCCAUGAUGGAUAAC------GUCUAUGUUGUUGUUUUUGUCGCCUCCU---UUUCGGCUUCGUCCU- (((.......(((((((......)))))))(((..(((((((.....)------))).)))..)))................---....)))........- ( -18.20, z-score = -0.92, R) >droSec1.super_4 5275413 91 - 6179234 GCCAUUGUUAUUUCGCUGACAAAAGUGAAAGAUCCCAUGAUGGAUAAC------GUCUAUGUUGUUGUUUUUGUCGCCUCCU---UUUCGGCUUCGUCCU- (((.......(((((((......)))))))(((..(((((((.....)------))).)))..)))................---....)))........- ( -18.20, z-score = -0.92, R) >droYak2.chr3R 27370036 91 - 28832112 GCCAUUGUUAUUUCGCUGACAAAAGUGAAAGAUCCCAUGAUGGAUAAC------GUCUAUGUUGUUGUUUUUGUCGCCUCCU---UUUCGGCUUCGUCCU- (((.......(((((((......)))))))(((..(((((((.....)------))).)))..)))................---....)))........- ( -18.20, z-score = -0.92, R) >droEre2.scaffold_4820 8919488 91 + 10470090 GCCAUUGUUAUUUCGCUGACAAAAGUGAAAGAUCCCAUGAUGGAUAAC------GUCUAUGUUGUUGUUUUUGUCGCCUCCU---UUUCGGCUUCGUCCU- (((.......(((((((......)))))))(((..(((((((.....)------))).)))..)))................---....)))........- ( -18.20, z-score = -0.92, R) >droAna3.scaffold_12911 830287 101 + 5364042 GCCAUUGUUAUUUCGCUGACAAAAGUGAAAGAUGCCUUGAUGGAUAACAGGACUGUGUCUGUUGUUGUUCCUACUGUCUCCUGCCUUUGGAUAUCCUUCCG .(((((((..(((((((......)))))))...))...)))))((((((((......)))))))).......................(((......))). ( -21.40, z-score = -0.94, R) >droWil1.scaffold_181130 9960375 76 - 16660200 GCCAUUGUUAUAUCGCUGACAAAAGUGAAAGAUGCCAUGAUGGAUAACGUUG--UUUUAUUUCAACAUCCUUCGUUUG----------------------- (.((((......(((((......)))))..)))).)((((.((((...((((--........)))))))).))))...----------------------- ( -13.80, z-score = -0.56, R) >droVir3.scaffold_13047 11222164 70 - 19223366 GCCAUUGUUGUUUCGCUGACAAAAGUGAAAGAUGUCUUGAUGGAUAACGUGG--CUGCGUUUCCUC-UCCCUA---------------------------- (((((.....(((((((......)))))))(.(((((....))))).)))))--)...........-......---------------------------- ( -16.30, z-score = -1.36, R) >droMoj3.scaffold_6540 3621838 71 + 34148556 GCCAUUGUUGUUUCGCUGACAAAAGUGAAAGAUGUCUUGAUGGAUAACGUGG--UUGCGUUUUCCCAUUCCCA---------------------------- ..((((....(((((((......)))))))))))....(((((..(((((..--..)))))...)))))....---------------------------- ( -15.40, z-score = -0.63, R) >consensus GCCAUUGUUAUUUCGCUGACAAAAGUGAAAGAUCCCAUGAUGGAUAAC______GUCUAUGUUGUUGUUUUUGUCGCCUCCU___UUUCGGCUUCGUCCU_ .((((((...(((((((......))))))).......)))))).......................................................... ( -9.88 = -9.99 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:43 2011