| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,416,836 – 26,416,919 |
| Length | 83 |
| Max. P | 0.982375 |
| Location | 26,416,836 – 26,416,919 |
|---|---|
| Length | 83 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 64.58 |
| Shannon entropy | 0.54030 |
| G+C content | 0.33139 |
| Mean single sequence MFE | -13.55 |
| Consensus MFE | -6.41 |
| Energy contribution | -5.54 |
| Covariance contribution | -0.87 |
| Combinations/Pair | 1.45 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.10 |
| SVM RNA-class probability | 0.982375 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26416836 83 + 27905053 AUCGAAACUGAAUUAAUUUGGUCACAUGACCGGACCGAGCCAGAAGAAAACAAA--UGUAGAUAUAUACCAUAUACCUCUACACA---------- .......(((..((..(((((((....)))))))..))..)))...........--((((((..((((...))))..))))))..---------- ( -17.00, z-score = -3.05, R) >droSim1.chr3R 26062566 74 + 27517382 AUCGAAACUGAAUUAAUUUGGUCACAUGACCG-----AGCCAGAAGAAAACAAA--UGUAGAUAUAUACCAUAUACCUACA-------------- .......(((......(((((((....)))))-----)).)))...........--(((((.(((((...))))).)))))-------------- ( -12.80, z-score = -2.77, R) >droYak2.chr3R 27336950 89 + 28832112 AUCAAAACUGAAUUAAUUUGGUCACAUGACCG-----AGCCAGAAGAAAACAAAA-UGUAGAUAUACUAUAUAUAUGUAUAUAUACACAGAAAUG .......(((......(((((((....)))))-----))................-((((.((((((.........)))))).)))))))..... ( -17.30, z-score = -3.32, R) >droGri2.scaffold_14624 1090283 75 + 4233967 -------CUGAAUUAAUUCGAUCACAUGACUGCACAAAAUUGGCAACAACCAAAACUGGAUUCCCGUAAAAUAUAUUUUUAC------------- -------..((((..........................(((....)))(((....)))))))..((((((.....))))))------------- ( -7.10, z-score = 0.04, R) >consensus AUCGAAACUGAAUUAAUUUGGUCACAUGACCG_____AGCCAGAAGAAAACAAA__UGUAGAUAUAUAACAUAUACCUAUAC_____________ .......(((........(((((....)))))........)))......(((....))).................................... ( -6.41 = -5.54 + -0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:42 2011