| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,400,670 – 26,400,813 |
| Length | 143 |
| Max. P | 0.714607 |
| Location | 26,400,670 – 26,400,813 |
|---|---|
| Length | 143 |
| Sequences | 6 |
| Columns | 153 |
| Reading direction | reverse |
| Mean pairwise identity | 72.66 |
| Shannon entropy | 0.51986 |
| G+C content | 0.38084 |
| Mean single sequence MFE | -32.70 |
| Consensus MFE | -19.59 |
| Energy contribution | -20.57 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.714607 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26400670 143 - 27905053 -UGGAAACAGAUAUAAACAAGUGGGCUGUGCUGGAAUCAGUUUCCGGUUUCUGCACAGUACAAAAGUAUCACCAAAAUGUACCAUCGAUGGGGUAUUUUUCU-AAACAAAAUAGCUCACAUUGUGCUUAACGUUUACAUAAUUUU-------- -((....))....(((((..(((((((((((.((((((.......)))))).))))..((.(((((((((.(((..(((...)))...)))))))))))).)-)........)))))))...((.....))))))).........-------- ( -34.90, z-score = -1.90, R) >droEre2.scaffold_4820 8865745 153 + 10470090 UGGAAAACAGAUAUAAACAAGUGGGCUGUGCUGGAAUCAGUUUCCGGUUUCUGCACAGUACAAAAGUAUCACCAAAAUUGACCAUCGACGGGGUAUUCUUCUAAAACAAAAUAGCUCACAUUGCGCUUUACGUAUACAUAAGCUUAUAAUUUC (((((....(((((.......((..((((((.((((((.......)))))).))))))..))...)))))(((....(((.....)))...)))....))))).........((((.....((((.....))))......))))......... ( -31.40, z-score = -0.61, R) >droYak2.chr3R 27320401 152 - 28832112 UGGAGAACAGAUAUAAACAAGUGGGCUGUGCUGGGAUCAGUUUCCGGUUUCUGCACAGUAAACAAGUAUCACCAAAAUGUACCAUCGAUGGGGUAUUUUUCA-AAACAGAAUAGCUCACUUUGUGUUCUAAGUAUGCAUACAUUUAAAAUUUA ...((((((.(.......((((((((((((((((((.....))))))).((((..........(((((((.(((..(((...)))...))))))))))....-...)))))))))))))))).))))))..(((....)))............ ( -34.94, z-score = -0.68, R) >droSec1.super_4 5227445 143 - 6179234 -UGGAAACAGAUAUAAACAAGUGGGCUGUGCUGGAAUCAGUUUCCGGUUUCUGCACAAUACAAAAGUAUCACCAAAAUGUACCAUCGAUGGGGUAUUUUUCU-AAACAAAAUAGCUCACAUUGUGCUUGAGGUUUACAUAAUUUU-------- -((.((((........(((((((((((((((.((((((.......)))))).))))..((.(((((((((.(((..(((...)))...)))))))))))).)-)........))))))).)))).......)))).)).......-------- ( -34.86, z-score = -1.62, R) >droSim1.chr3R 26046219 143 - 27517382 -UGGAAACAGAUAUAAACAAGUGGGCUGUGCUGGAAUCAGUUUCCGGUUUCUGCACAGUACAAAAGUAUCACCAAAAUGUACCAUCGAUGGGGUAUUUUCCU-AAACAAAAUAGCUCACAUUGUGCUUUACGUUUACAUAAUUUU-------- -((....))(((((.......((..((((((.((((((.......)))))).))))))..))...)))))....(((((((.((.((((((((((((((...-....))))).)))).)))))))...)))))))..........-------- ( -35.60, z-score = -1.87, R) >droGri2.scaffold_14830 2202450 116 + 6267026 -CGAAAAUAGAUACAAUCA--CUGGUUGUGUUGG---------UGGGGUGGUCCACAGCCCUUAAGUG------AAGUCUCUUGUUUGUGGGACUGUUUUUU---UUUUUGUUGUUGAGGUUGGGGUGGUUAGUAGC---------------- -........((((((((..--...)))))))).(---------((((....))))).(((((.(((..------.((((((........))))))...))).---.................)))))..........---------------- ( -24.51, z-score = 0.68, R) >consensus _UGAAAACAGAUAUAAACAAGUGGGCUGUGCUGGAAUCAGUUUCCGGUUUCUGCACAGUACAAAAGUAUCACCAAAAUGUACCAUCGAUGGGGUAUUUUUCU_AAACAAAAUAGCUCACAUUGUGCUUUACGUUUACAUAAUUUU________ ................(((((((((((((((.((((((.......)))))).))))).....................(((((........))))).................)))))).))))............................. (-19.59 = -20.57 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:41 2011