| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,234,473 – 9,234,580 |
| Length | 107 |
| Max. P | 0.518440 |
| Location | 9,234,473 – 9,234,580 |
|---|---|
| Length | 107 |
| Sequences | 11 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 74.23 |
| Shannon entropy | 0.57833 |
| G+C content | 0.60302 |
| Mean single sequence MFE | -39.14 |
| Consensus MFE | -18.64 |
| Energy contribution | -19.23 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.40 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.518440 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9234473 107 + 23011544 GCAUCGUUCCAUACAAAACAAGGCGGCGGCCACCGCUGCCGCACAAACGGCAAAUCUUGCUGCUGCCCUGCAGCGAUCGGCUGCCAUUAUGAAUGCGGUGGCAUCGC .((((((..((((.........((((((((....))))))))......((((....(((((((......))))))).....))))..))))...))))))....... ( -42.40, z-score = -1.33, R) >droSim1.chr2L 9010444 107 + 22036055 GCAUCGUUCCAUACAAAACAAGGCGGCGGCCACCGCUGCCGCACAAACGGCAAAUCUUGCUGCUGCCCUGCAGCGCUCGGCUGCCAUUAUGAAUGCGGUGGCAUCGC .((((((..((((........(((((((((......(((((......)))))......)))))))))..(((((.....)))))...))))...))))))....... ( -42.00, z-score = -1.00, R) >droSec1.super_3 4693389 107 + 7220098 GCAUCGUUCCAUACAAAACAAGGCGGCGGCCACCGCUGCCGCACAAACGGCAAAUCUUGCUGCUGCCCUGCAGCGAUCGGCUGCCAUUAUGAAUGCGGUGGCAUCGC .((((((..((((.........((((((((....))))))))......((((....(((((((......))))))).....))))..))))...))))))....... ( -42.40, z-score = -1.33, R) >droYak2.chr2L 11901181 107 + 22324452 GCAGCGUUCCAUACAAAACAAGGCGGCGGCCACCGCUGCCGCACAAACGGCAAGUCUUGCUGCUGCCCUGCAGCGAUCGGCUGCCAUUAUGAAUGCGGUGGCAUCGC ((.((((((.(((.........((((((((....))))))))......((((.((((((((((......)))))))..)))))))..)))))))))....))..... ( -46.30, z-score = -1.64, R) >droEre2.scaffold_4929 9839841 107 + 26641161 GCAGCGUUCCAUACAAAACAAGGCGGCGGCCACAGCUGCCGCACACACGGCAAAUCUUGCUGCUGCCCUGCAGCGAUCGGCUGCCAUUAUGAAUGCGGUGGCAUCGC ((.((((((.(((.........((((((((....))))))))......((((....(((((((......))))))).....))))..)))))))))....))..... ( -43.10, z-score = -1.07, R) >droAna3.scaffold_12943 574968 104 + 5039921 GCACCAUUCUAUCCAAAAUAAGGCAGCGGCC---ACUGCCGCUCACCCGACAAACAUUGCAGCCGCGCUGCAGCGAUCGACCGCCAUUAUGAAUGCGGUGGCAUCGC .....................((.((((((.---...))))))...)).........((((((...))))))((((((.(((((..........))))).).))))) ( -34.20, z-score = -1.13, R) >dp4.chr4_group5 1552533 98 + 2436548 UCAUCAUUCUCUCCA---CAAGGCAGCGGCC---GCCGCCGCAGCCACGGCCAACAUCGCAGCUGCGCUGCAACGCUCGGC---CAUUAUGAAUGCGGUGGCGUCGC ...............---.......(((((.---(((((((((..((.((((......(((((...))))).......)))---)....))..)))))))))))))) ( -39.92, z-score = -1.19, R) >droPer1.super_5 5960599 98 + 6813705 UCAUCAUUCUCUCCA---CAAGGCAGCGGCC---GCCGCCGCAGCCACGGCCAACAUCGCAGCUGCGCUGCAACGCUCGGC---CAUUAUGAAUGCGGUGGCGUCGC ...............---.......(((((.---(((((((((..((.((((......(((((...))))).......)))---)....))..)))))))))))))) ( -39.92, z-score = -1.19, R) >droVir3.scaffold_12963 637880 101 + 20206255 CCAUCAUUCGCAUCAUAGCAAGGCAGCGGC------UGCCGCCGCAACGGCGCAUAUUGCAGCUGCGCUGCAGCGCUCGGCCGCCAUUAUGAAUGCGGUGGCAUCGC ((((....((((((((((...(((.(((((------....)))))..((((((....((((((...)))))))))).)))))....))))).)))))))))...... ( -43.70, z-score = -0.26, R) >droMoj3.scaffold_6500 12159277 101 + 32352404 UCAUCAUUCGCAUCAUAGCAAAACAGCGGCA---GCUGCCGCCGCAACGGCGCACAUUGCAGCUGCAUUGCAGCGAUCGGC---CAUUAUGAACGCGGUGGCAUCGC .........(((.....((......)).(((---((((((((((...)))))......))))))))..))).(((((..((---(((..(....)..)))))))))) ( -38.60, z-score = -1.09, R) >anoGam1.chr3R 14791321 95 - 53272125 ------------GCAAAACCAAAUCACUGCCGGCGCAGUUACACCGGGAGCAGCUCCAGCAUCACAACUGCAGAGUCAGUCAAAAAUAAUGAAUGUCGUCGUACCAU ------------(((............)))((((((((((......((((...))))........))))))...(.((.(((.......))).)).)))))...... ( -18.04, z-score = 0.32, R) >consensus GCAUCAUUCCAUACAAAACAAGGCAGCGGCC___GCUGCCGCACAAACGGCAAAUCUUGCAGCUGCCCUGCAGCGAUCGGCUGCCAUUAUGAAUGCGGUGGCAUCGC .........................((((.....((((((((.......(((.....))).(((((...)))))....................)))))))).)))) (-18.64 = -19.23 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:49 2011