| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,399,021 – 26,399,123 |
| Length | 102 |
| Max. P | 0.933706 |
| Location | 26,399,021 – 26,399,123 |
|---|---|
| Length | 102 |
| Sequences | 8 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 75.78 |
| Shannon entropy | 0.45584 |
| G+C content | 0.53844 |
| Mean single sequence MFE | -33.05 |
| Consensus MFE | -14.94 |
| Energy contribution | -15.77 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.933706 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26399021 102 + 27905053 ----------CAAUCGUCACUC---CAUCACGACCAUUCAGACUCAAAGGCGGCCAAGGAUAUUUCACCCACUAGGUUGAAGAGCCUGGCUGCCUUCGAGCAGUUCAUCAAGGCG ----------....((((....---......((....)).(.(((.((((((((((.((...(((((.((....)).)))))..)))))))))))).))))..........)))) ( -33.50, z-score = -3.12, R) >droSim1.chr3R 26044586 102 + 27517382 ----------CAAUCGUCACUC---CAUCACGACCAUUCAGACUCAAAGGCGGCCAAGGAUAUUUCACCCACUAGGUUGAAGAGCCUGGCUGCCUUCGAGCAGUUCAUCAAGGCG ----------....((((....---......((....)).(.(((.((((((((((.((...(((((.((....)).)))))..)))))))))))).))))..........)))) ( -33.50, z-score = -3.12, R) >droSec1.super_4 5225806 102 + 6179234 ----------CAAUCGUCACUC---CAUCACGACCAUUCAGACUCAAAGGCGGCCAAGGAUAUUUCACCCACUAGGUUGAAGAGCCUGGCUGCCUUCGAGCAGUUCAUCAAGGCG ----------....((((....---......((....)).(.(((.((((((((((.((...(((((.((....)).)))))..)))))))))))).))))..........)))) ( -33.50, z-score = -3.12, R) >droYak2.chr3R 27318782 102 + 28832112 ----------CAAUCGUCACUC---CAUCAUGACCAUUCAGACUCAAAGGCGGCCAAGGAUAUUUCACCCACUAGGUUGAAGAGCCUGGCUGCCUUCGAGCAGUUCAUCAAGGCG ----------....((((....---.....(((....)))(.(((.((((((((((.((...(((((.((....)).)))))..)))))))))))).))))..........)))) ( -34.20, z-score = -3.15, R) >droEre2.scaffold_4820 8864138 102 - 10470090 ----------CAAUCGUCACUC---CAUCAUGACCAUUCAGACUCAAAGGCGGCCAAGGAUAUUUCACCCACUAGGUUGAAGAGCCUGGCUGCCUUCGAGCAGUUCAUCAAGGCG ----------....((((....---.....(((....)))(.(((.((((((((((.((...(((((.((....)).)))))..)))))))))))).))))..........)))) ( -34.20, z-score = -3.15, R) >droAna3.scaffold_12911 780340 113 - 5364042 CAUCUUCACCCAGCCUCCAUGCG--CAUCCCGAUCAUGCUGCUCCCAAGGCAGCCAAGGACAUUUCGCCCACUCGGGCCAAGUGCCUGGCUGCCUUCGAGCAGUUCAUCAAGGCU ...........(((((..(((((--.....)).....(((((((..((((((((((.((.(((((.((((....)))).))))))))))))))))).))))))).)))..))))) ( -51.10, z-score = -5.51, R) >dp4.chr2 29661566 115 - 30794189 CGAAUCAUCGCUAGCAUCAUCCAGCUCUCAUCAAGAUCAAGAUCAAGACCAAGCCCAAGACAUCUCACCAUCGAAGGCCAAGAGCCUGGCUGCCUUCGAGCAGUUCGUCACGGCC (((((..(((...(((....((((((((......(((....)))........(((...((..........))...)))..)))).)))).)))...)))...)))))........ ( -22.20, z-score = 0.99, R) >droPer1.super_7 519612 115 - 4445127 CGAAUCAUCGCUAGCAUCAUCCAGCUCUCAUCAAGAUCAAGAUCAAGACCAAGCCCAAGACAUCUCACCAUCGAAGGCCAAGAGCCUGGCUGCCUUCGAGCAGUUCGUCACGGCC (((((..(((...(((....((((((((......(((....)))........(((...((..........))...)))..)))).)))).)))...)))...)))))........ ( -22.20, z-score = 0.99, R) >consensus __________CAAUCGUCACUC___CAUCACGACCAUUCAGACUCAAAGGCGGCCAAGGAUAUUUCACCCACUAGGUUGAAGAGCCUGGCUGCCUUCGAGCAGUUCAUCAAGGCG ..............................................(((((((((.(((........((.....))........))))))))))))................... (-14.94 = -15.77 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:40 2011