| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,392,898 – 26,392,991 |
| Length | 93 |
| Max. P | 0.955109 |
| Location | 26,392,898 – 26,392,991 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 92.92 |
| Shannon entropy | 0.11930 |
| G+C content | 0.52233 |
| Mean single sequence MFE | -27.14 |
| Consensus MFE | -25.52 |
| Energy contribution | -25.76 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.955109 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26392898 93 - 27905053 UUAUGAGGGGCGUAAAGCAAGGAAUCACCGGGGUGCUGGCAGAAACUGACAGUUGGCACGGCCAUGGAAAACAUGGAAAACUCGGAAACUUGG-------- (((((.....)))))..((((......(((((((((..((...........))..))))..(((((.....)))))....)))))...)))).-------- ( -28.30, z-score = -2.51, R) >droSim1.chr3R 26038293 93 - 27517382 UUAAGAGGGGCGUAAAGCAGGGAAUCACCGGGGUGCUGGCAGAAACUGACAGUUGGCACGGCCAUGGAAAACAUGGAAAACUCGGAAACUUGG-------- .((((....((.....)).........(((((((((..((...........))..))))..(((((.....)))))....)))))...)))).-------- ( -28.30, z-score = -2.48, R) >droSec1.super_4 5219662 93 - 6179234 UUAAGAGGGGCGUAAAGCAGGGAAUCACCGGGGUGCUGGCAGAAACUGACAGUUGGCACGGCCAUGGAAAACAUGGAAAACUCGGAAACUUGG-------- .((((....((.....)).........(((((((((..((...........))..))))..(((((.....)))))....)))))...)))).-------- ( -28.30, z-score = -2.48, R) >droYak2.chr3R 27312471 100 - 28832112 UUAAGAGGGGCGUAAAGCAGGGAAUCACUGGGGUGCUGGCAGAAACUGACAGUUGGCACGGCCAUGGAAAACAUGG-AAACUCGGAAACUGGCAAACUUGG .((((....((.....)).........(((((((((..((...........))..))))..(((((.....)))))-...)))))...........)))). ( -26.10, z-score = -1.17, R) >droEre2.scaffold_4820 8857879 92 + 10470090 UUAAGAGGGGCGUAGAGCAAGGAAUCACCAGGGUGCUGGCAGAAACUGACAGUUGGCACGGCCAUGGAAAACAUGG-AAACUCGGAAACUUGG-------- ....((...((.....))......)).(((((((((..((...........))..))))..(((((.....)))))-...........)))))-------- ( -24.70, z-score = -1.30, R) >consensus UUAAGAGGGGCGUAAAGCAGGGAAUCACCGGGGUGCUGGCAGAAACUGACAGUUGGCACGGCCAUGGAAAACAUGGAAAACUCGGAAACUUGG________ ....(((..((.....)).........(((((((((..((...........))..))))..(((((.....)))))....)))))...))).......... (-25.52 = -25.76 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:35 2011