| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,381,883 – 26,381,985 |
| Length | 102 |
| Max. P | 0.731939 |
| Location | 26,381,883 – 26,381,985 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 75.17 |
| Shannon entropy | 0.44031 |
| G+C content | 0.48658 |
| Mean single sequence MFE | -14.93 |
| Consensus MFE | -10.20 |
| Energy contribution | -8.27 |
| Covariance contribution | -1.94 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.731939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26381883 102 + 27905053 --------UUAUUCCACCCAUUUCCCCUGGAUUUCCCCGCCUAUUCCCUGCGCUUUUUCCCACUUUUCUCACUCAACUGAGAGUUG---AACGUAGUUGAGUUCCUUUUCUUA --------....................(((......(((.........))).....)))..........(((((((((...(...---..).)))))))))........... ( -13.60, z-score = -1.40, R) >droSim1.chr3R 26027396 94 + 27517382 ---------------UCCCAUUUCCC-UGGAUUUCCCCGCCUAUUCCCUGCGCUUUUUCCCACUUUUCUCACUCAACUGAGAGUUG---AACCUAGUUGAGUUCCCUUUCUUA ---------------...........-.(((......(((.........))).....)))..........((((((((.((.....---...))))))))))........... ( -13.00, z-score = -1.38, R) >droSec1.super_4 5208716 93 + 6179234 ---------------UCCCAUUUCCC-UGGAUUUCCCCGCCUAUUCCCUGCGCUUUU-CCCACUUUUCUCACUCAACUGAGAGUUG---AACCUAGUUGAGUUCCCUUUCUUA ---------------...........-.(((......(((.........)))....)-))..........((((((((.((.....---...))))))))))........... ( -12.60, z-score = -1.22, R) >droYak2.chr3R 27300832 110 + 28832112 UUGCCGCCCAUUUCCCCUGGAUUUCCACUGGAUUUCCCGCCUAUUCCCUGCGCUUUUUCCCACUUUUCUCGCUCAACUGAGAGUUG---AACCCAGUUGAGUUCCUUUUCUUA ..................(((.(((.(((((......(((.........)))..........(..((((((......))))))..)---...))))).))).)))........ ( -19.70, z-score = -1.72, R) >droEre2.scaffold_4820 8846763 110 - 10470090 UCGCCGCCCAUUGCCACUGGAUUUCCCCUGGCUUUCCCGCCUACUCCCUGCGCUUUUUCCCACUUUUCUCACUCAACCGAGAGUUG---AACCUAGUUGAGUUCCUUUUCGCA ..((.((.....((((..((....))..))))......((.........)))).................(((((((..((.....---...)).)))))))........)). ( -18.50, z-score = -0.53, R) >droAna3.scaffold_12911 761156 100 - 5364042 -------------UCCCCGCCAUCUCCGCCAUUUCCCUCUUUAUUCUCCAGACUUUUUCCCACUUUUCUCGCUCAACCGUGAGCUGGUGAACCCAGUUGAGUUCCCUUUCUUA -------------................................(((..((((......((((...(((((......)))))..)))).....)))))))............ ( -12.20, z-score = -0.74, R) >consensus _____________CCACCCAUUUCCCCUGGAUUUCCCCGCCUAUUCCCUGCGCUUUUUCCCACUUUUCUCACUCAACUGAGAGUUG___AACCUAGUUGAGUUCCCUUUCUUA .................(((.......))).......(((.........)))..................(((((((((...(((....))).)))))))))........... (-10.20 = -8.27 + -1.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:34 2011