| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,356,354 – 26,356,474 |
| Length | 120 |
| Max. P | 0.727561 |
| Location | 26,356,354 – 26,356,474 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.56 |
| Shannon entropy | 0.22170 |
| G+C content | 0.48714 |
| Mean single sequence MFE | -40.31 |
| Consensus MFE | -31.40 |
| Energy contribution | -34.07 |
| Covariance contribution | 2.67 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.727561 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26356354 120 + 27905053 UGUGUUAUCUCAUGUUAUCCUUUGGCUUCCUCUGCCGUGGCUUGUCUGUCAUCAGUGUGGUUUUCCACAUCCAAACACACAGAUGCAGAACAGGACCGUCGAGAGGGGAAUACGAAGGAG .................(((((((..(((((((..(((((((((((((.((((.(((((................))))).))))))).))))).))).))..)))))))..))))))). ( -45.59, z-score = -3.24, R) >droSim1.chr3R 26002132 120 + 27517382 UGUGUUAUCUCAUGUUAUCCUUUGGCUUUCUCUGCCGUGGCUUGUCUGUCAUCAGUGUGGCUUUCCACAUGCAAACACACAGAUGCAGAACAGGACCGUCGAGAGGGGAAUACGAAGGAG .................(((((((..(((((((..(((((((((((((.((((.(((((((.........))...))))).))))))).))))).))).))..)))))))..))))))). ( -43.10, z-score = -2.41, R) >droSec1.super_4 5175855 120 + 6179234 UGUGUUAUCUCAUGUUAUCCUUUGGCUUUCUCUGCCGUGGCUUGUCUGUCAUCAGUGUGGCUUUCCACAUGCAAACACACAGAUGCAGAGCAGGACCGUCGAGAGGGGAAUACGAAGGAG .................(((((((..(((((((..(((((((((((((.((((.(((((((.........))...))))).)))))))).)))).))).))..)))))))..))))))). ( -43.10, z-score = -2.09, R) >droYak2.chr3R 27273850 120 + 28832112 UGUGUUAUCUCAUGUUAUCCUUUGGCUUUCUCUGCCGUGGCUUGUCUGUCAUCAGUGUGGUUUUCCACAUGCAAACACACAGAUGCAGAACAGGACCAUCGAGAGGGGAAUACGAAGAAG ...................(((((..(((((((..(((((((((((((.((((.(((((................))))).))))))).))))).))).))..)))))))..)))))... ( -38.19, z-score = -1.59, R) >droEre2.scaffold_4820 8817120 119 - 10470090 UGUGUUAUCUCAUGUUAUCCUUUGGCUUUCUCUGCCGUGGCUUGUCUGUCAUCAGUGUGGUUUUCCACAUGCAAACACACAGAUGCAGAGCAGGACCGUCGAGAGGG-AACUCGAAGGAG .................((((((((..((((((..(((((((((((((.((((.(((((................))))).)))))))).)))).))).))..))))-)).)))))))). ( -40.89, z-score = -1.68, R) >droAna3.scaffold_12911 734883 109 - 5364042 UGUACUAGCUUGUGUUAUCCUGUGACUUUCAGAGCUGUGGCUUGUCUGUCAUCAGUGUGGCUUUCCACAUGCAAACACACAUUGGCUGGGCC-----------AGGGGAAAAUGAAAGAG ((..((((((((((((...(((((((.....((((....))))....)))).)))(((((....)))))....))))))....))))))..)-----------)................ ( -31.00, z-score = 0.34, R) >consensus UGUGUUAUCUCAUGUUAUCCUUUGGCUUUCUCUGCCGUGGCUUGUCUGUCAUCAGUGUGGCUUUCCACAUGCAAACACACAGAUGCAGAACAGGACCGUCGAGAGGGGAAUACGAAGGAG .................(((((((..(((((((..(((((((((((((.((((.(((((................))))).)))))))).)))).))).))..)))))))..))))))). (-31.40 = -34.07 + 2.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:31 2011