| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,347,127 – 26,347,237 |
| Length | 110 |
| Max. P | 0.576785 |
| Location | 26,347,127 – 26,347,237 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 87.25 |
| Shannon entropy | 0.23955 |
| G+C content | 0.53712 |
| Mean single sequence MFE | -41.25 |
| Consensus MFE | -27.43 |
| Energy contribution | -28.35 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.576785 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26347127 110 - 27905053 -UCCUCUGUCGCUGUCCGCCGGAAAAGGAAUGCGCCGUACAAUUUACGGCCCGUAAUAUCGGACGUGCAUGUGUG--CGGUGCUCGUAAAUAUGUCAGGAUAUGCAGGAGGAC--- -((((((...(((((((.((......))...((((((((((...((((..(((......))).))))....))))--))))))..............))))).)).)))))).--- ( -44.30, z-score = -2.96, R) >droAna3.scaffold_12911 725058 113 + 5364042 UCGGGACCUGGCUGUCCGGCGG---AGGAGUGUGCCGUACAAUUUACGGCUCGUAAAAUUGCACGUGCAUGUGUGUUCUGGGCUCGUAAAUAUGUCGGAAUAAGCUGGAGCACGAA (((.(..(..(((.(((((((.---(.(((((.((((((.....)))))).)........(((((....))))).......)))).).....)))))))...)))..)..).))). ( -39.50, z-score = -1.23, R) >droEre2.scaffold_4820 8808000 108 + 10470090 -UCCGCCG-CGCUGUCCGGCGG-AAAGGAAUGCGCCGUACAAUUUACGGCUCGUAAUAUGGAACGUGCAUGUGUG--CGGAGCUCGUAAAUAUGUCAGGAUAUGCUGGAGGAC--- -(((.(((-.(((((((((((.-(......).))))(.((((((((((((((((((((((.......))))).))--).)))).))))))).)))).))))).))))).))).--- ( -41.40, z-score = -1.92, R) >droYak2.chr3R 27264409 110 - 28832112 -UCCUGUGUCGCUGUCCGGCGGAAAAGGAAUGCUCCGUACAAUUUACGGCUCGUAAUAUGGAACGUGCGUGUGUG--CGGCGCUCGUAAAUAUGCCAGGAUAUGCAGGAGGAC--- -((((((((....((((((((..........((.(((((((...((((.(.(((........))).)))))))))--))).)).........)))).))))))))))))....--- ( -38.11, z-score = -1.05, R) >droSec1.super_4 5166588 110 - 6179234 -UCCUCUGCCGCUGUCCGGCGGAAAAGGAAUGCGCCGUACAAUUUACGGCUCGUAAUAUGGGACGUGCAUGUGUG--CGGAGCUCGUAAAUAUGUCAGGAUAUGCAGGAGGAC--- -((((((...(((((((((((.(.......).))))(.((((((((((((((((((((((.......))))).))--).)))).))))))).)))).))))).)).)))))).--- ( -42.10, z-score = -2.32, R) >droSim1.chr3R 25992881 110 - 27517382 -UCCUCUGCCGCUGUCCGGCGGAAAAGGAAUGCGCCGUACAAUUUACGGCUCGUAAUAUGGGACGUGCAUGUGUG--CGGAGCUCGUAAAUAUGUCAGGAUAUGCAGGAGGAC--- -((((((...(((((((((((.(.......).))))(.((((((((((((((((((((((.......))))).))--).)))).))))))).)))).))))).)).)))))).--- ( -42.10, z-score = -2.32, R) >consensus _UCCUCUGUCGCUGUCCGGCGGAAAAGGAAUGCGCCGUACAAUUUACGGCUCGUAAUAUGGGACGUGCAUGUGUG__CGGAGCUCGUAAAUAUGUCAGGAUAUGCAGGAGGAC___ .((((((...((((((((((.........(((.((((((.....)))))).))).((((...(((.((.............)).)))..))))))).))))).)).)))))).... (-27.43 = -28.35 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:28 2011