| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,345,624 – 26,345,718 |
| Length | 94 |
| Max. P | 0.609698 |
| Location | 26,345,624 – 26,345,718 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 82.20 |
| Shannon entropy | 0.30374 |
| G+C content | 0.31236 |
| Mean single sequence MFE | -19.14 |
| Consensus MFE | -11.22 |
| Energy contribution | -11.86 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.609698 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26345624 94 - 27905053 AAGGAAAUUCCAAACUUUGUGAACAACAAAUUCCAAUGAAAUAUCAAAGAGAAGGUCAUUGGAA--UUGGUUUACAAGAUAUUGAGAUUGAGAGUG .....(((..(((..(((((((((....(((((((((((....((.....))...)))))))))--)).)))))))))...)))..)))....... ( -24.70, z-score = -3.35, R) >droEre2.scaffold_4820 8806655 87 + 10470090 AAGGAAAUUUCCAAUUUCGAGAACAACAAAUUCCAAUGAAAUGCCAAAGACAAGGUUAUUGGAA--UGGGCUUACAAGAUAUU-AGAGUG------ ..(((....)))......(((..((.....((((((((....(((........)))))))))))--))..)))..........-......------ ( -14.00, z-score = -0.37, R) >droYak2.chr3R 27262908 87 - 28832112 AAGGAAAUUUCUAAUUUCGUGAGCAACAAAUUCCAAUGAAAUACCGAGAGCAAGGUCUUUGGAA--UUGGUUUACAAAAUAUU-AGAAUG------ ........(((((((...((((((....((((((((.((.....(....).....)).))))))--)).)))))).....)))-))))..------ ( -20.90, z-score = -2.87, R) >droSec1.super_4 5165166 95 - 6179234 AAGGAAAUUUCAAACUUUGUGAACAACAAAUUCCAAUGAAAUACCAAAGACAAGGUCAUUUGGA-UUUGCUUUACAAGAUAUUGAGAAUAAUAGUG .......((((((..((((((((...(((((((.(((((....((........))))))).)))-)))).))))))))...))))))......... ( -18.10, z-score = -1.64, R) >droSim1.chr3R 25991400 96 - 27517382 AAGGAAAUUUCAAACUUUGUAAACAACAAAUUCCAAUGAAAUACCAAAGACAAGGUCAUUUGGAUUUUGCUUUACAAGAUAUUGAGAAUAAUAGUG .......((((((..((((((((...((((.((((((((....((........))))).))))).)))).))))))))...))))))......... ( -18.00, z-score = -1.83, R) >consensus AAGGAAAUUUCAAACUUUGUGAACAACAAAUUCCAAUGAAAUACCAAAGACAAGGUCAUUGGAA__UUGGUUUACAAGAUAUUGAGAAUGA_AGUG ...............(((((((((......((((((((....(((........))))))))))).....))))))))).................. (-11.22 = -11.86 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:28 2011