| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,344,669 – 26,344,763 |
| Length | 94 |
| Max. P | 0.631155 |
| Location | 26,344,669 – 26,344,763 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 61.22 |
| Shannon entropy | 0.65137 |
| G+C content | 0.32266 |
| Mean single sequence MFE | -16.20 |
| Consensus MFE | -6.40 |
| Energy contribution | -6.56 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.631155 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 26344669 94 - 27905053 UUUUAAUAUCCUUAAGAACUUUCAUUCCUUGGAACUUUUUUCUUGGGAAACCCCAUUAUU----AUUAUUAAGUCGUAUUUUUCGUUUGGUAUUACCA------------ ...(((((((...(((((.(((((.....))))).)))))...((((....)))).....----........................)))))))...------------ ( -11.90, z-score = 0.12, R) >droEre2.scaffold_4820 8805548 92 + 10470090 UCCUAAUAU-CCUUAAAAGUUUCAUGCCUUGGAACUUACUUCUUGGGAAACAACGUGAC-----------------CUUCUUCAAUUUGUUUUGAAUAUUUAUUUCACCU .........-......((((((((.....)))))))).......(((((((((..(((.-----------------.....)))..)))))))(((.......))).)). ( -14.90, z-score = -1.59, R) >droYak2.chr3R 27261774 110 - 28832112 UUCUAAUCUCCCUCAGAAGUUCCAUGCCUGGGAACUCAAUUCUUGGGAAGCAAGAUGCUUCAGGAACUCAAACUCACUUUUUCAAUUCAUUUUGAAUAUAUAUUUUACCA ...............((.(((((....(..((((.....))))..)(((((.....))))).)))))))...........(((((......))))).............. ( -22.70, z-score = -1.35, R) >droSec1.super_4 5164170 88 - 6179234 UUCUAAUAUCCUUAAGGACUUUCAUGCCUUGGAAUUUUUUUCUUGGGAAACACCAUUCUU----AGUAUUACGUUGUAUUUUUCGUUUCCCA------------------ ........(((..((((.(......))))))))..........((((((((.........----(((((......)))))....))))))))------------------ ( -15.12, z-score = -1.34, R) >droSim1.chr3R 25990428 88 - 27517382 UUCUAAUAUCCUUAAGGACUUUCAUGCCUUGGAACUUUUUUCUUGGGAAACACCAUUAUU----AGUAUUACGUUAUAUUUUUUGUUUCCCA------------------ ........(((..((((.(......))))))))..........(((((((((.....(..----(((((......)))))..))))))))))------------------ ( -16.40, z-score = -2.08, R) >consensus UUCUAAUAUCCUUAAGAACUUUCAUGCCUUGGAACUUUUUUCUUGGGAAACACCAUUAUU____AGUAUUAAGUCAUAUUUUUAGUUUCCUAU_A__A____________ ..........((((((((.(((((.....))))).....))))))))............................................................... ( -6.40 = -6.56 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:27 2011