| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,290,193 – 26,290,298 |
| Length | 105 |
| Max. P | 0.500000 |
| Location | 26,290,193 – 26,290,298 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 93.02 |
| Shannon entropy | 0.09620 |
| G+C content | 0.28571 |
| Mean single sequence MFE | -18.20 |
| Consensus MFE | -17.41 |
| Energy contribution | -16.87 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.15 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 26290193 105 + 27905053 CAAAAUACCAAUUUUGGAAUAGAAUACAUAAAUUUAUGUAGUGGAUUUUGUUUUUAUAAUGCACAUUUAAGUGGGGUAAUUAAACUGAAACGUUACGCAAAUUAG .....((((...((((((......((((((....))))))(((.(((.((....)).))).))).))))))...))))........................... ( -14.30, z-score = 0.30, R) >droSim1.chr3R 25935723 105 + 27517382 CAAAUUACCAAUUUUGAAACAGAAUACAUACAUUUAUGUAGUGAAUUUUGUUUUCAUGAUGCACAUUUAAGUGGGGUAAUUAAACUGAAACGAAACGCAAAUUAG ..(((((((.(((.(((((((((((.((((((....))).))).)))))).))))).))).(((......))).)))))))........................ ( -19.70, z-score = -1.70, R) >droSec1.super_4 5114606 105 + 6179234 CAAAUUGCCAAUUUUGAAACAGAAUACAUACAUUUAUGUAGUGGAUUUUGUUUUCAUGAUGCACAUUUAAGUGGGGUAAUUUAACUGAAACGAAACGCAAAUUAG .((((((((.(((.(((((((((((.((((((....))).))).)))))).))))).))).(((......))).))))))))....................... ( -20.60, z-score = -1.35, R) >consensus CAAAUUACCAAUUUUGAAACAGAAUACAUACAUUUAUGUAGUGGAUUUUGUUUUCAUGAUGCACAUUUAAGUGGGGUAAUUAAACUGAAACGAAACGCAAAUUAG ..(((((((...((((((......((((((....))))))(((.(((.((....)).))).))).))))))...)))))))........................ (-17.41 = -16.87 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:19 2011