| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,285,636 – 26,285,726 |
| Length | 90 |
| Max. P | 0.805040 |
| Location | 26,285,636 – 26,285,726 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 66.46 |
| Shannon entropy | 0.68328 |
| G+C content | 0.46950 |
| Mean single sequence MFE | -24.16 |
| Consensus MFE | -11.61 |
| Energy contribution | -13.22 |
| Covariance contribution | 1.61 |
| Combinations/Pair | 1.45 |
| Mean z-score | -0.87 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.805040 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26285636 90 + 27905053 -GACUUGGAGUGCGAAAUUCUCUUGUUUGCAGGGGUCAAAGUGCGCACUUGUUUACCUACGGGUAUAAGCACCC-AAGUGGCCCAAUCUCGU -.((((((((((((.....((((((....))))))........))))))((((((((....))))..)))).))-))))............. ( -29.82, z-score = -1.77, R) >droAna3.scaffold_12911 650336 90 - 5364042 GAUCCAAAAGUGCGAAUGUCUGUUGUUUGCGGGGGUCAAAGGGCACACUUGUUUACCCAAGGGUAUUAGCACU--AAGUGGCCCAAUCUAAC (((((.....((((((((.....)))))))).)))))...((((.((((((((((((....))))..))))..--.))))))))........ ( -30.80, z-score = -2.39, R) >droEre2.scaffold_4820 8746088 77 - 10470090 -GACUUGGAGUGCGAAACUCUCUUGUUUGCUGGAGUCAAAGUGCGCACUUGUUUACCUACUGCUAUUAGCAAUC-UCGC------------- -......(((((((..(((((((.(....).))))....))).)))))))..........(((.....)))...-....------------- ( -15.90, z-score = 0.60, R) >droYak2.chr3R 27204344 89 + 28832112 -AACUUGGAGUGCGAAACUCUCUGGUUUGCUGGAGUCAAAGUGCGCACUUGUUUACCCAAGGGUAUUAGCACC--AAGUGGCCCAAUCUCGU -.((((((((((((..((((((..(....)..)))....))).))))))((((((((....))))..))))))--))))............. ( -29.00, z-score = -1.60, R) >droSec1.super_4 5110045 89 + 6179234 -GACUUGGAGUGCGAAAUUAUCUUGUUUGCAGGGGUCAAAGUGCGCACUUGUUUACCUGCGGGUAUUAGCACU--GUGGGGCCCAAUCUCGU -......(((((((((.........)))))).(((((..(((((..((((((......))))))....)))))--....)))))...))).. ( -27.90, z-score = -0.73, R) >droSim1.chr3R 25931177 89 + 27517382 -GACUUGGAGUGCGAAAUUCUCUUGUUUGCAGGGGUCAAAGUGCGCACUUGUUUACCUGCGGGUAUUAGCACC--AUGGGGCCCAAUCUCGU -((.((((((((((.....((((((....))))))........))))))......(((..((((....)).))--..)))..)))))).... ( -25.32, z-score = 0.22, R) >droWil1.scaffold_181130 9787900 74 + 16660200 ----------------UAUUUGGCAUUUAUUUGC-UUGUUUUUUUCUCUCGUUC-UCUGUGGGUCUAAAUUUCAAGUGCAGACCAAAAAAAU ----------------..(((((..(.((((((.-..((((....(((.((...-..)).)))...))))..)))))).)..)))))..... ( -10.40, z-score = -0.39, R) >consensus _GACUUGGAGUGCGAAAUUCUCUUGUUUGCAGGGGUCAAAGUGCGCACUUGUUUACCUACGGGUAUUAGCACC__AAGUGGCCCAAUCUCGU .......(((((((.....((((((....))))))........)))))))(((((((....))))..)))...................... (-11.61 = -13.22 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:18 2011