| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,216,087 – 9,216,180 |
| Length | 93 |
| Max. P | 0.871314 |
| Location | 9,216,087 – 9,216,180 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 94.27 |
| Shannon entropy | 0.07899 |
| G+C content | 0.55556 |
| Mean single sequence MFE | -29.40 |
| Consensus MFE | -24.44 |
| Energy contribution | -24.00 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.650380 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9216087 93 + 23011544 GGUUGGCCCCUGCGAUAAUCGCCAUUCGCUUCGAAACCCCCCUCGGUUCACGAUCGCGAAUCGGUGAGCCAACAGUGCUCUAUAUAGCGAGCU .((((((...........(((((((((((.(((.((((......))))..)))..)))))).)))))))))))...((((........)))). ( -32.40, z-score = -2.37, R) >droSim1.chr2L 8997177 93 + 22036055 GGUUGGCCCCUGCGAUAAUCUCCAUUCCCUUCAAAACCCCCUUGGGUCCACGAUCGCGAAUCGGAGAGCCAACUGUGCUCUAUAUAGCGAGCU (((((((...........((((((((((..((...((((....))))....))..).)))).))))))))))))..((((........)))). ( -27.90, z-score = -1.78, R) >droSec1.super_3 4680193 93 + 7220098 GGUUGGCCCCUGCGAUAAUCUCCAUUCCCUUCAAAACCCCCUUGGGUCCACGAUCGCGAAUCGGAGAGCCAACUGUGCUCUAUAUAGCGAGCU (((((((...........((((((((((..((...((((....))))....))..).)))).))))))))))))..((((........)))). ( -27.90, z-score = -1.78, R) >consensus GGUUGGCCCCUGCGAUAAUCUCCAUUCCCUUCAAAACCCCCUUGGGUCCACGAUCGCGAAUCGGAGAGCCAACUGUGCUCUAUAUAGCGAGCU .((((((...........(((((((((...((...(((......)))....))....)))).)))))))))))...((((........)))). (-24.44 = -24.00 + -0.44)
| Location | 9,216,087 – 9,216,180 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 94.27 |
| Shannon entropy | 0.07899 |
| G+C content | 0.55556 |
| Mean single sequence MFE | -35.67 |
| Consensus MFE | -30.84 |
| Energy contribution | -31.07 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.871314 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9216087 93 - 23011544 AGCUCGCUAUAUAGAGCACUGUUGGCUCACCGAUUCGCGAUCGUGAACCGAGGGGGGUUUCGAAGCGAAUGGCGAUUAUCGCAGGGGCCAACC .((((........))))...((((((((....((((((..(((.(((((......)))))))).)))))).(((.....)))..)))))))). ( -39.20, z-score = -2.97, R) >droSim1.chr2L 8997177 93 - 22036055 AGCUCGCUAUAUAGAGCACAGUUGGCUCUCCGAUUCGCGAUCGUGGACCCAAGGGGGUUUUGAAGGGAAUGGAGAUUAUCGCAGGGGCCAACC .((((........))))...(((((((((((.((((.(..(((.((((((....))))))))).).)))))))))...((....)))))))). ( -33.90, z-score = -1.80, R) >droSec1.super_3 4680193 93 - 7220098 AGCUCGCUAUAUAGAGCACAGUUGGCUCUCCGAUUCGCGAUCGUGGACCCAAGGGGGUUUUGAAGGGAAUGGAGAUUAUCGCAGGGGCCAACC .((((........))))...(((((((((((.((((.(..(((.((((((....))))))))).).)))))))))...((....)))))))). ( -33.90, z-score = -1.80, R) >consensus AGCUCGCUAUAUAGAGCACAGUUGGCUCUCCGAUUCGCGAUCGUGGACCCAAGGGGGUUUUGAAGGGAAUGGAGAUUAUCGCAGGGGCCAACC .((((........))))...(((((((((((.((((.(..(((.((((((....))))))))).).)))))))(.....)....)))))))). (-30.84 = -31.07 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:47 2011