| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,275,772 – 26,275,866 |
| Length | 94 |
| Max. P | 0.844585 |
| Location | 26,275,772 – 26,275,866 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 68.51 |
| Shannon entropy | 0.55458 |
| G+C content | 0.41643 |
| Mean single sequence MFE | -16.95 |
| Consensus MFE | -7.97 |
| Energy contribution | -9.05 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.844585 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26275772 94 + 27905053 --UUUUUGCUGUAUAUAUGAACGUAUUUACUUAUACUUUUAUCUUUAUGGGUAGUUCACAAACAACCCUUCGCUACCCGCCACUGUCUCAGUCGCA --........(((...(((((.((((......)))).)))))...)))(((((((................)))))))((.((((...)))).)). ( -18.09, z-score = -2.27, R) >droYak2.chr3R 27194233 92 + 28832112 CCUUUUUGCUGUAUAUA----UGUAUUUAUUUAUACGUUUAUCUUCAUGGGUAGUUGGGGAACUACCCUUCUUUACCCGCCACUGUCACCGUCGCA ......((..(.(((.(----(((((......)))))).))))..)).((((((..((((.....))))...))))))((.((.......)).)). ( -20.70, z-score = -1.68, R) >droSec1.super_4 5100236 90 + 6179234 --UUUUUGCUGUAUAUA----CGUAUUUAUUUAUACUUUUAUCUUUAUGGGUAGUUCUCAAACAACCCUUCGCUACCCGCCACUGUCUCAGUCGCA --...............----.((((......))))............(((((((................)))))))((.((((...)))).)). ( -15.99, z-score = -2.52, R) >droSim1.chr3R 25921338 90 + 27517382 --UUUUUGCUGUUUAUA----CGUAUUUAUUUAUACUUUUAUCUUUAUGGGUAGUUCUAAAACAACCCUUCGCUACCCGCCACUGUCUCAGUCGCA --...............----.((((......))))............(((((((................)))))))((.((((...)))).)). ( -15.99, z-score = -2.40, R) >droMoj3.scaffold_6540 19341410 72 + 34148556 ---------------------CGUAUAGCAUCGUAUAGCACAGAUUGUCACAAAUAUACGCGC-ACAUCUCGC-ACGCGC-GCUCUCUCGCUCGCG ---------------------.(((((((........))...(.....).....)))))(((.-......)))-.((((.-((......)).)))) ( -14.00, z-score = 1.10, R) >consensus __UUUUUGCUGUAUAUA____CGUAUUUAUUUAUACUUUUAUCUUUAUGGGUAGUUCACAAACAACCCUUCGCUACCCGCCACUGUCUCAGUCGCA ......................((((......))))............((((((..................))))))((.((((...)))).)). ( -7.97 = -9.05 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:17 2011