| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,264,391 – 26,264,482 |
| Length | 91 |
| Max. P | 0.960554 |
| Location | 26,264,391 – 26,264,482 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 79.13 |
| Shannon entropy | 0.37235 |
| G+C content | 0.52627 |
| Mean single sequence MFE | -35.10 |
| Consensus MFE | -21.48 |
| Energy contribution | -22.23 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.960554 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26264391 91 + 27905053 GACUUCUGUAGUUGUAUCG--AAAGAAAGGAAUCCUCGCGGGGGGCAGCUAAUGCGGCACUUAGCGUUCUUCGCACAAUGCAACUGCAGAGGA---------------- ..((((((((((((((((.--...))...........(((((((((.(((((........))))))))))))))....)))))))))))))).---------------- ( -41.00, z-score = -5.03, R) >droAna3.scaffold_12911 627390 104 - 5364042 GACUUCUGUAGUUGUUGCC--AAAGAAAAGAAGC-CAAUGGGGGGCAUCUAAUGCGGCACUUAAGGCUUG--CCGCAAUGCAACUGCAGAGGAUUUGGGGGGCAGGGAA ..(((((((((((((....--.......(((.((-(.......))).)))..(((((((.........))--)))))..)))))))))))))................. ( -36.60, z-score = -1.74, R) >droEre2.scaffold_4820 8722955 91 - 10470090 GACUUCUGUAGUUGUUUCG--AAAGAAAGAACUCAUCGCGGGGGGCAGCUAAUGCGGCACUUAGGGCUCAGUCCACAAUGCAACUGCAGAGUG---------------- .(((.(((((((((((((.--...)))....(((.....)))((((.((....))(((.(....))))..)))).....))))))))))))).---------------- ( -29.60, z-score = -1.54, R) >droYak2.chr3R 27182545 109 + 28832112 GACUUCUGUAGUUGUUUCGCGAAAGAAAGAAAGCAUCGCGGGGGGCAGCUAAUGCGGCACUUAGGGCUCAGUCCACAAUGCAACUGCAGAGGAGUGGAGAGGACUGGCC ..((((((((((((((((((((.............)))))))((((.((....))(((.(....))))..)))).....)))))))))))))................. ( -35.12, z-score = -0.55, R) >droSec1.super_4 5089108 91 + 6179234 GACUUCUCUAGUUGUAUCG--AAAGAAAGGAAUCCUCGCGGGGGGCAGCUAAUGCGGCACUUAGGGCUCUUCGCUCAAUGCAACUGCAGAGGA---------------- ..(((((.((((((((((.--...))...........(((((((((..((((........)))).)))))))))....)))))))).))))).---------------- ( -33.90, z-score = -2.36, R) >droSim1.chr3R 25910308 91 + 27517382 GACUUCUCUAGUUGUAUCG--AAAGAAAGGAAUCCUCGCGGGGGGCAGCUAAUGCGGCACUUAGGGCUCUUCGCACAAUGCAACUGCAGAGGA---------------- ..(((((.((((((((((.--...))...........(((((((((..((((........)))).)))))))))....)))))))).))))).---------------- ( -34.40, z-score = -2.86, R) >consensus GACUUCUGUAGUUGUAUCG__AAAGAAAGGAAUCCUCGCGGGGGGCAGCUAAUGCGGCACUUAGGGCUCUUCCCACAAUGCAACUGCAGAGGA________________ ..(((((((((((((.((......))...........((..(((((.((....)).)).)))...))............)))))))))))))................. (-21.48 = -22.23 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:14 2011