| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,232,844 – 26,232,934 |
| Length | 90 |
| Max. P | 0.858561 |
| Location | 26,232,844 – 26,232,934 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 85.17 |
| Shannon entropy | 0.27599 |
| G+C content | 0.46169 |
| Mean single sequence MFE | -27.62 |
| Consensus MFE | -19.95 |
| Energy contribution | -20.82 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.858561 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26232844 90 - 27905053 ------GAAUGAGGAUGUGGAUGUAGAUGCGGCCGGGGUUUUUG-AGGUUCGGAAAGACAAUUGCCAAAUGGUUUAUUGUUUUUGCGGCUGCUCUGU ------.................((((.((((((.(..((....-.))..)(.(((((((((.(((....)))..))))))))).))))))))))). ( -27.70, z-score = -2.25, R) >droSim1.chr3R 25879295 90 - 27517382 ------GAAUGAGGAUGUGGUUGUGGAUGCGGCCGGGGUUUUUG-AGGUUCGGAAAGACAAUUGCCAAAUGGUUUAUUGUUUUUGCGGCUGCUCUGU ------................(..((.((((((.(..((....-.))..)(.(((((((((.(((....)))..))))))))).)))))))))..) ( -27.10, z-score = -1.84, R) >droSec1.super_4 5057563 90 - 6179234 ------GAACGAGGAUGUGGAUGUGGAUGCGGCCGGGGUUUUUG-AGGUUCGGAAAGACAAUUGCCAAAUGGUUUAUUGUUUUUGCGGCUGCUCUGU ------................(..((.((((((.(..((....-.))..)(.(((((((((.(((....)))..))))))))).)))))))))..) ( -27.10, z-score = -1.60, R) >droYak2.chr3R 27149866 97 - 28832112 GAAUGAGGAUAUGGAUGAGGAUGUAGAUGCGACCGGGGUUUUUUGAGGUUCGGAAAGACAAUUGCCAAAUGGUUUAUUGUUUUUGCGGCUGCUCUGU ..................(((.((((.(((..(((((.(((...))).)))))(((((((((.(((....)))..)))))))))))).))))))).. ( -25.00, z-score = -1.21, R) >droEre2.scaffold_4820 8689440 90 + 10470090 ------GGUUGAGGAUGUAGAUGUAGAUGCGGCCGGGGUUUUCC-AGGUUCGGAAAGACAAUUGCCAAAUGGUUUAUUGUUUUUGCGGCUGCUCUGU ------.................((((.(((((((((....)))-......(.(((((((((.(((....)))..))))))))).))))))))))). ( -28.60, z-score = -1.75, R) >droAna3.scaffold_13340 21251659 89 - 23697760 -------AAACAGGAUGCGAAUG-AGGUCCUGAGAUGGUUUUCAGGAUGUUAGAAAGACAAUUGCCAAAUGGUUUAUUGUUUUUGCGGCUGCUCUGU -------..(((((..((...((-(.(((((((((....))))))))).))).(((((((((.(((....)))..)))))))))...))...))))) ( -30.20, z-score = -3.49, R) >consensus ______GAAUGAGGAUGUGGAUGUAGAUGCGGCCGGGGUUUUUG_AGGUUCGGAAAGACAAUUGCCAAAUGGUUUAUUGUUUUUGCGGCUGCUCUGU .......................((((.((((((((..(((....)))..)..(((((((((.(((....)))..))))))))).))))))))))). (-19.95 = -20.82 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:12 2011