| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,214,889 – 26,214,999 |
| Length | 110 |
| Max. P | 0.513932 |
| Location | 26,214,889 – 26,214,999 |
|---|---|
| Length | 110 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 61.23 |
| Shannon entropy | 0.80453 |
| G+C content | 0.44313 |
| Mean single sequence MFE | -24.13 |
| Consensus MFE | -8.93 |
| Energy contribution | -8.73 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.73 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513932 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26214889 110 + 27905053 UUCGCCUCUCGAAUUUGAUUUUAAUUUACAGUAAACCGU---CGACAUGAAAUUUUUCGUUGCACUCGCUCUCUUUGCGU---GCCUCGGCUCUCUUGCCUUGGCCAAGGAUGAUG ...((....((((...(((((((.((.((........))---.))..))))))).))))..))......((((((((...---(((..(((......)))..))))))))).)).. ( -22.00, z-score = -0.06, R) >droSim1.chr3R 25869218 110 + 27517382 UUCGCUUCUCGAAUUUGAUUUUAAUUUACAGUAAACCGU---CAACAUGAAAUUUUUCGUUGCACUCGCUCUCUUUGCGU---GCCUCGGCUCUCUUGCCUUGGCCAAGGAUGAUG ...((....((((...(((((((....((........))---.....))))))).))))..))......((((((((...---(((..(((......)))..))))))))).)).. ( -22.40, z-score = -0.53, R) >droSec1.super_4 5047816 110 + 6179234 UUCGCUUCUCGAAUUUUAUUUUAAUUUUCAGUAAACCGU---CGACAUGAAAUUUUUCGUUGCACUCGCUCUCUUUGCGU---GCCUCGGCUCUCUUGCCUUGGCCAAGGAUGAUG ...((...((((..((((((.........))))))...)---))).(((((....))))).))......((((((((...---(((..(((......)))..))))))))).)).. ( -21.50, z-score = -0.21, R) >droYak2.chr3R 27139636 113 + 28832112 UUUGCCUCUCGAUUUUGGUUUUAAUUUACAGUAAACAGCCGUCAUCAUGAAAAUUUUCGUUGCACUCGCUCUCUUCGCGU---GCCUCGGCUCCCUUGCCCAGGCCGUUGAUAACG ..(((.....(((..((((((((........))))..))))..)))(((((....))))).)))..........(((((.---((((.(((......))).)))))).)))..... ( -23.30, z-score = -0.45, R) >droEre2.scaffold_4820 8676952 109 - 10470090 -UUCGCUCUCGAUUUUGAUUUUAAUUUACAGUAAACAGA---CAUCAUGAAAUUUUUGGUUGCACUCGCGCUCUUCGCGU---GCCUCGGCUCCCUUGCCCUGGCCGUUGAUAAUG -.......(((((.................((((.((((---.((......)).)))).))))....((((.....))))---(((..(((......)))..))).)))))..... ( -19.80, z-score = 0.79, R) >droAna3.scaffold_13340 21241919 105 + 23697760 -------UUCGAUUUCCCCAUUA-UUUACAGUAAUCCAAAGCAAAAAUGAAAUUGUUCAUUGCAAUCGCUCUAGUUGCGA---GCCUCGGCUCUCUGGCUCUGGCCAAGGAGGAAG -------......((((((....-................((((....(..(((((.....)))))..).....))))((---((....))))..((((....)))).)).)))). ( -26.90, z-score = -1.03, R) >dp4.chr2 29492249 104 - 30794189 ----AUAACCCCACCAAUUUUCUGCUUUUAGUAAUUUAA--CAAAGAUGAAACUGCUCGUUGCAUUCGCUUUGAUUGCCA---GCCUCGGCGCUCUGGCCCAGGCAGAGGAAG--- ----.............((((((((((............--(((((.((((..(((.....))))))))))))...((((---((....))....))))..))))))))))..--- ( -26.30, z-score = -0.75, R) >droPer1.super_7 342569 104 - 4445127 ----AUAACCCCACCAAUUUUCUGCUUUUAGUAAUUUAA--CAAAGAUGAAACUGCUCGUUGCAUUCGCUUUGAUUGCCA---GCCUCGGCGCUCUGGCCCAGGCAGAGGAAG--- ----.............((((((((((............--(((((.((((..(((.....))))))))))))...((((---((....))....))))..))))))))))..--- ( -26.30, z-score = -0.75, R) >droWil1.scaffold_181130 9711113 100 + 16660200 ---------AUUGCUUUUACUUUGCUUUC--CAGUUAAA--CAAAGAUGAAAUCCUUCAUUGCAUUGGCGUUGAUUGCCACCAGUCUCUUUGCUGGGGCUCUGGCUGAUGAAG--- ---------.....((((((((((.(((.--.....)))--))))).)))))..(((((((((..(((((.....)))))(((((......))))).......)).)))))))--- ( -24.10, z-score = -0.32, R) >droVir3.scaffold_12855 3329756 95 + 10161210 --------------CUAAUUCUAGAAAGU-AAAAGCAAA--CAAA-AUGAAAUAUUUCAUUGCAUUCGCUUUGAUUGCGG---CCGUCUGUGCUCUUGCGCAGGCCCAAGAGCAAA --------------....((((.......-....((((.--((((-(((((....))))))((....)).))).))))((---..((((((((....)))))))))).)))).... ( -24.90, z-score = -1.39, R) >droMoj3.scaffold_6540 24289765 95 - 34148556 --------------CUUAUUCUAGAAAGU-GAAAACAAA--UAAA-AUGAAAUAUUUCAUUGCAUUCGUUUUGGUUGCGG---GCCUCUGCGCUCUUGCGCAGGCCCAAGAGCAGA --------------....((((......(-.(((((.((--(..(-(((((....))))))..))).))))).)....((---((((..((((....)))))))))).)))).... ( -27.90, z-score = -1.79, R) >droGri2.scaffold_14906 6020230 92 + 14172833 --------------CUAUUUCUAGCAAGUUAAAAACAAA--CAAA-AUGAAAUAUUUCAUUGUAAUCGCAUUCAUUGCGG---GCAUCUGCGCUCUUGCGCAGGCCGAAGAG---- --------------.((((((......(((.......))--)...-..))))))((((........((((.....))))(---((..((((((....)))))))))))))..---- ( -24.20, z-score = -2.23, R) >consensus _______CUCGAAUUUAAUUUUAGUUUACAGUAAACAAA__CAAACAUGAAAUUUUUCGUUGCACUCGCUCUCAUUGCGU___GCCUCGGCGCUCUUGCCCAGGCCGAGGAUGA_G ..............................................(((((....)))))......(((.......)))....(((..(((......)))..)))........... ( -8.93 = -8.73 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:10 2011