| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,213,546 – 9,213,643 |
| Length | 97 |
| Max. P | 0.668525 |
| Location | 9,213,546 – 9,213,643 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 80.95 |
| Shannon entropy | 0.34410 |
| G+C content | 0.48028 |
| Mean single sequence MFE | -24.45 |
| Consensus MFE | -11.61 |
| Energy contribution | -11.94 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.668525 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9213546 97 + 23011544 ---CUCCAAACACCACCGAAAUGGAAGGUGUUAUUUGUGCGUG------GUUCUUAUCUAAUCAUUUGAUAAGUUCCAUUCAACACGUGUUGCCCCCUGCUCACCC ---.....((((((.((.....))..))))))...((.(((((------(..((((((.........))))))..)))).((((....))))......)).))... ( -23.30, z-score = -2.06, R) >droSim1.chr2L 8994646 96 + 22036055 --GCUCCUAACACCCCCGAAAUGGAAGGUGUUAUUUGUGCGUG------GUUCUUAUCUAAUCAUUUGAUAAGUUCCAUUCAACACGUGU-GCCCCCUGCUCCCC- --((...(((((((.((.....))..)))))))...(((.(((------(..((((((.........))))))..))))....)))....-.......)).....- ( -22.60, z-score = -2.45, R) >droSec1.super_3 4677671 96 + 7220098 --GCUCCUAACACCCCCGAAAUGGAAGGUGUUAUUUGUGCGUG------GUUCUUAUCUAAUCAUUUGAUAAGUUCCAUUCAACACGUGU-GCCCCCUGCUUCCC- --((...(((((((.((.....))..)))))))...(((.(((------(..((((((.........))))))..))))....)))....-.......)).....- ( -22.60, z-score = -2.40, R) >droYak2.chr2L 11884638 102 + 22324452 ---CUACAAACACCCCUGAAAUGGAAGGUGUUAUGUGUGUGUGUGUGUGGUUCUUAUCUAAUCAUUUGAUAGGUUCCAUUCAACACGUGU-GCCCCCUGCCCCCCC ---.....((((((((......))..))))))..(((..(((((..((((..((((((.........))))))..))))...)))))..)-))............. ( -29.80, z-score = -2.91, R) >droEre2.scaffold_4929 9823355 93 + 26641161 ---CCCCAAACGCCCCUGAAAUGGAAGGUGUUAUGUGUGUGUG------GCUCUUAUCUAAUCAUUUGAUAAGUUUCCCUCAACACGUGU-GCCCCCUGCACC--- ---.....((((((((......))..))))))((((((.((.(------(..((((((.........))))))....)).))))))))((-((.....)))).--- ( -25.20, z-score = -2.96, R) >droAna3.scaffold_12943 560735 97 + 5039921 GUGCUUGCAACACCCCGAAAAUA-AACGUGUGUUUUCGGCAUG------GGGCUUAUCUAAUCAAUUGAUAAUUCUCGCUCAACACGUGC-CCUGCCUGCCCCCC- ..((..(((.((..(((((((((-......)))))))))..))------(((((((((.........))))).....((.......))))-)))))..)).....- ( -23.20, z-score = -1.35, R) >consensus ___CUCCAAACACCCCCGAAAUGGAAGGUGUUAUUUGUGCGUG______GUUCUUAUCUAAUCAUUUGAUAAGUUCCAUUCAACACGUGU_GCCCCCUGCUCCCC_ ........((((((.((.....))..))))))......(((((.........((((((.........))))))..........))))).................. (-11.61 = -11.94 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:45 2011