| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,174,084 – 26,174,144 |
| Length | 60 |
| Max. P | 0.982495 |
| Location | 26,174,084 – 26,174,144 |
|---|---|
| Length | 60 |
| Sequences | 5 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 85.15 |
| Shannon entropy | 0.27480 |
| G+C content | 0.42358 |
| Mean single sequence MFE | -9.89 |
| Consensus MFE | -9.52 |
| Energy contribution | -9.36 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.11 |
| SVM RNA-class probability | 0.982495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26174084 60 + 27905053 UAAAUUUCAUCAAACUAAUCCAUCAGCAGUUCUAUGAUGGAU------CCCGAAUACCACCUCCCU .................((((((((.........))))))))------.................. ( -9.10, z-score = -2.39, R) >droEre2.scaffold_4820 8644105 63 - 10470090 --AAUGUCAUCAAUCUUAUCCAUCAGCAGUUCGAUGAUGGAUCUCCCACCAGUACCCCAUCUACC- --...............((((((((.(.....).)))))))).......................- ( -9.10, z-score = -0.88, R) >droYak2.chr3R 27105931 66 + 28832112 UAAAUUUCAUCAAACUAGUCCAUCAGCAGUUCGAUGAUGGAUCUCCCUCCAGAAUCCCACCUUCCU ......(((((.((((.((......)))))).)))))((((......))))............... ( -11.30, z-score = -1.94, R) >droSec1.super_4 5015179 66 + 6179234 UAAAUUUCAUCAAACUAAUCCAUCAGCAGUUCGAUGAUGGAUAUUCCUCCAGAAACCCACCUCCCU ....((((.........((((((((.(.....).)))))))).........))))........... ( -9.97, z-score = -2.09, R) >droSim1.chr3R 25835720 66 + 27517382 UAAAUUUCAUCAAACUAAUCCAUCAGCAGUUCGAUGAUGGAUAUUCCUCCAGAAACCCACCUCCCU ....((((.........((((((((.(.....).)))))))).........))))........... ( -9.97, z-score = -2.09, R) >consensus UAAAUUUCAUCAAACUAAUCCAUCAGCAGUUCGAUGAUGGAUAUCCCUCCAGAAACCCACCUCCCU .................((((((((.........))))))))........................ ( -9.52 = -9.36 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:03 2011