| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,170,138 – 26,170,239 |
| Length | 101 |
| Max. P | 0.563366 |
| Location | 26,170,138 – 26,170,239 |
|---|---|
| Length | 101 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 71.13 |
| Shannon entropy | 0.56485 |
| G+C content | 0.58109 |
| Mean single sequence MFE | -33.09 |
| Consensus MFE | -17.32 |
| Energy contribution | -17.49 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.24 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563366 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26170138 101 + 27905053 UGUCAGAUAGUUUUGCGGUCGCUAACCCGCCUCGCUUCGCCAGCGACGUCGACUGC--GGCAGCGACUGCAAUUGCAAUGGCACACUCAAAUUUACGGUUGUG .((((....((.(((((((((((...((((.((((.(((....))).).)))..))--)).)))))))))))..))..))))(((..(........)..))). ( -35.60, z-score = -1.38, R) >droSim1.chr3R 25831958 93 + 27517382 UGUCAGAUAGUUUUGCGGUCGCUAACCCGCCUCGCUUCGACUGCGACGUCGACUGC--GGCAGCGACUGCAAUUGCA--------CUCAAAGUUACGGGUGUG ............(((((((((((...((((.((((.(((....))).).)))..))--)).)))))))))))..(((--------(((........)))))). ( -35.90, z-score = -1.85, R) >droSec1.super_4 5011389 93 + 6179234 UGUCAGAUAGUUUUGCGGUCGCUAACCCGCCUCGCUUCGACUGCGACGUCGACUGC--GGCAGCGACUGCAAUUGCA--------CUCAAAGUUACGGGUGUG ............(((((((((((...((((.((((.(((....))).).)))..))--)).)))))))))))..(((--------(((........)))))). ( -35.90, z-score = -1.85, R) >droEre2.scaffold_4820 8640285 94 - 10470090 UGUCAGAUAGUUUUGCGGUCGCUAACCCGCCUCGCUGCGACUGCGACGUCGACUGC--GGCAGCGACUGCAAU-GCAA------GUGUGUGUGUGUCUGUGUG ...((((((....((((((((((...((((.(((.((((....)).)).)))..))--)).))))))))))((-(((.------...))))).)))))).... ( -34.00, z-score = -0.20, R) >droAna3.scaffold_13340 21202942 99 + 23697760 UGUCAGAUAGUUUUGCGGUCGCUAACCCGCCUCGCUUCAACUGCAACUGCAACUGC--AACGGCGACAGCAACAGCGACAGCGACGCUGGCAGCACAAACG-- ((((((...(((..((.((((((....((((..((.......))...(((....))--)..))))........)))))).))))).)))))).........-- ( -30.00, z-score = -0.06, R) >dp4.chr2 29453346 80 - 30794189 UGUCAGAUAGUUUUGCGGUCGCUAACCCGCCUCGCUUCGGCAGUGGCAGCGACUGCAUGGGAGCGAGCGCCAUUCGAAUG----------------------- ..............(((.(((((..((((((.(((....)).).))).((....))..)))))))).)))..........----------------------- ( -29.30, z-score = -0.52, R) >droPer1.super_7 303491 80 - 4445127 UGUCAGAUAGUUUUGCGGUCGCUAACCCGCCUCGCUUCGGCAGUGGCAGCGACUGCAUGGGAGCGAGCGCCAUGCGAAUG----------------------- .........((...(((.(((((..((((((.(((....)).).))).((....))..)))))))).)))...)).....----------------------- ( -30.90, z-score = -0.58, R) >consensus UGUCAGAUAGUUUUGCGGUCGCUAACCCGCCUCGCUUCGACUGCGACGUCGACUGC__GGCAGCGACUGCAAUUGCAA_______CUCAAA_UUACGGGUGUG ............(((((((((((.....((.((((.......))))........)).....)))))))))))............................... (-17.32 = -17.49 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:02 2011