| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,157,863 – 26,157,923 |
| Length | 60 |
| Max. P | 0.657884 |
| Location | 26,157,863 – 26,157,923 |
|---|---|
| Length | 60 |
| Sequences | 5 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 78.97 |
| Shannon entropy | 0.37851 |
| G+C content | 0.52926 |
| Mean single sequence MFE | -17.56 |
| Consensus MFE | -14.72 |
| Energy contribution | -14.52 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.21 |
| Mean z-score | -0.86 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.657884 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26157863 60 - 27905053 UACAACUUGAGCAGGCUGAACCUGCGCAGUUGGCAAAUUGCGUCGUCAGUUCGGAAAAGG- .....(((...(..(((((....((((((((....))))))))..)))))..)...))).- ( -18.50, z-score = -1.28, R) >droAna3.scaffold_13340 21191363 58 - 23697760 GACGA-UCAAACUGAACGAACCUGCGCAGUUGGC-AAUUGCGUCUUCAUUUGUGGAAGGA- ..((.-((.....)).))..((((((((((....-.))))))).((((....))))))).- ( -11.60, z-score = 0.51, R) >droEre2.scaffold_4820 8627823 56 + 10470090 -----CUUGAGCUGCCUGAACCUGCGCAGUUGGGAAAUUGCGUCGUCAGCUGGGAAAAGGG -----(((...((..((((....((((((((....))))))))..))))..))...))).. ( -15.90, z-score = -0.01, R) >droYak2.chr3R 27088357 59 - 28832112 UACAACUUGAGCAGGCUGAACCUGCGCAGUUGGGAAAUUGCGUCGUCAGCUGGAAAAGG-- .....(((...(.((((((....((((((((....))))))))..)))))).)..))).-- ( -20.80, z-score = -2.23, R) >droSec1.super_4 4999302 60 - 6179234 UACAACUUGAGCAGGCUGAACCUGCGCAGUUGGCAAAUUGCGUCGUCAGCUCGGCAAAGC- .....(((..((.((((((....((((((((....))))))))..))))))..)).))).- ( -21.00, z-score = -1.28, R) >consensus UACAACUUGAGCAGGCUGAACCUGCGCAGUUGGCAAAUUGCGUCGUCAGCUGGGAAAAGG_ .............((((((....((((((((....))))))))..)))))).......... (-14.72 = -14.52 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:57:00 2011