| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,139,682 – 26,139,735 |
| Length | 53 |
| Max. P | 0.791016 |
| Location | 26,139,682 – 26,139,735 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 95.53 |
| Shannon entropy | 0.07607 |
| G+C content | 0.55793 |
| Mean single sequence MFE | -10.90 |
| Consensus MFE | -10.02 |
| Energy contribution | -9.98 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.791016 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26139682 53 - 27905053 GCCAGCCUUGAUGUCUCCAUUGAGCGCUGCUCAUCAGCCUCACC-UUUCCCAUA ((.(((((..(((....)))..)).)))))..............-......... ( -11.50, z-score = -1.90, R) >droEre2.scaffold_4820 8617085 54 + 10470090 GCCAGCCCUGAUGUCUCCGUUGAGCGCUGCUCAUCAGCCUCACCUUUUCCCUUA ..................(.((((.((((.....)))))))).).......... ( -9.00, z-score = -0.68, R) >droYak2.chr3R 27077434 54 - 28832112 GCCAGCCUUGAUGUCUCCGUUGAGCGCUGCCCAUCAGCCUCACCUUUUCCCAUA ..((((((..(((....)))..)).))))......................... ( -11.00, z-score = -1.83, R) >droSec1.super_4 4988915 53 - 6179234 GCCAGCCUUGAUGUCUCCAUUGAGCGCUGCUCAUCAGCCUCACC-UUUCCCAUA ((.(((((..(((....)))..)).)))))..............-......... ( -11.50, z-score = -1.90, R) >droSim1.chr3R 25809287 53 - 27517382 GCCAGCCUUGAUGUCUCCAUUGAGCGCUGCUCAUCAGCCUCACC-UUUCCCAUA ((.(((((..(((....)))..)).)))))..............-......... ( -11.50, z-score = -1.90, R) >consensus GCCAGCCUUGAUGUCUCCAUUGAGCGCUGCUCAUCAGCCUCACC_UUUCCCAUA ((.((((((((((....))))))).)))))........................ (-10.02 = -9.98 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:59 2011