| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,095,998 – 26,096,072 |
| Length | 74 |
| Max. P | 0.990537 |
| Location | 26,095,998 – 26,096,072 |
|---|---|
| Length | 74 |
| Sequences | 3 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 67.57 |
| Shannon entropy | 0.45235 |
| G+C content | 0.40731 |
| Mean single sequence MFE | -17.17 |
| Consensus MFE | -12.08 |
| Energy contribution | -12.20 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.42 |
| SVM RNA-class probability | 0.990537 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26095998 74 - 27905053 AAGUAAAAGUGGGAGAAGGAAAAGAGUAAAAGUGGGAGACACAAGGUGUUUCUUGUUAAGAGUUUUCCACAUCU ........((((((((..............((..((((((((...))))))))..)).....)))))))).... ( -18.01, z-score = -2.68, R) >droAna3.scaffold_13340 21137689 57 - 23697760 ----------------AAGUUGAG-GUGGAAGUGGGAGGCACAAGGUGUUCUAUGUUGGCCGUUUUUCUACUCU ----------------.......(-(((((((.....(((.(((.(((...))).))))))...)))))))).. ( -14.80, z-score = -0.84, R) >droSim1.chr3R 25763393 73 - 27517382 AAGUAAAAGUGGGAGAAUG-AAAGAGUAAAAGUGGGAGACACAAGGUGUUUCUUGUUAAGAGUUUUCCACAUCU ........((((((((.(.-...)......((..((((((((...))))))))..)).....)))))))).... ( -18.70, z-score = -2.87, R) >consensus AAGUAAAAGUGGGAGAAAG_AAAGAGUAAAAGUGGGAGACACAAGGUGUUUCUUGUUAAGAGUUUUCCACAUCU ...............................(((((((((((((((....)))))).....))))))))).... (-12.08 = -12.20 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:56 2011