| Sequence ID | dm3.chr3R |
|---|---|
| Location | 26,089,823 – 26,089,882 |
| Length | 59 |
| Max. P | 0.569477 |
| Location | 26,089,823 – 26,089,882 |
|---|---|
| Length | 59 |
| Sequences | 8 |
| Columns | 68 |
| Reading direction | forward |
| Mean pairwise identity | 69.41 |
| Shannon entropy | 0.59958 |
| G+C content | 0.51210 |
| Mean single sequence MFE | -19.20 |
| Consensus MFE | -7.39 |
| Energy contribution | -9.04 |
| Covariance contribution | 1.66 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.569477 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 26089823 59 + 27905053 AAGCCCUUUUAACGGCCAGUGCGUGAUUCUUCU-GCCGGAGAAAUGGCUGAAGAAAGGGA-------- ...(((((((..((((((........((((((.-...)))))).))))))..))))))).-------- ( -21.60, z-score = -2.29, R) >droSim1.chr3R 25756382 59 + 27517382 AAGCCCUUUUUACGGCCAGUGCGUGAUUCUUCU-GCGGGAGAAAUGGCUGAAGAAAGGGA-------- ...((((((((.((((((........((((((.-...)))))).)))))).)))))))).-------- ( -23.60, z-score = -2.82, R) >droSec1.super_4 4940110 59 + 6179234 AAGCCCUUUUUAUGGCCAGUGCGUGAUUCUUCU-GCGGGAGAAAUGGCUGAAGAAAGGGA-------- ...((((((((.((((((........((((((.-...)))))).)))))).)))))))).-------- ( -21.30, z-score = -2.25, R) >droYak2.chr3R 27025693 60 + 28832112 AGCCCUUUUUUACGGCCAGUGCGUGAUUCUUCCAGCGGGAGAAAUGGCUGCAGAAAGGGA-------- ..((((((((..((((((........(((((((...))))))).)))))).)))))))).-------- ( -22.80, z-score = -1.83, R) >droEre2.scaffold_4820 8564130 59 - 10470090 AGUCCCCUUUUAAGGCCAGUGCGUGAUUCUUCU-GCGGGAGAAAUGGCUGAAGAAAGGGA-------- ....(((((((..(((((........((((((.-...)))))).)))))...))))))).-------- ( -20.20, z-score = -1.45, R) >droAna3.scaffold_13340 21131142 60 + 23697760 AAACCCUUUUUAUGGCCAGUGCGUGCUUCGGCUCUCGGCGAAAGCAGUCGGAGAAAGAGA-------- .....((((((.((((.....((.((....))...))((....)).)))).))))))...-------- ( -17.20, z-score = 0.03, R) >dp4.chr2 29376619 59 - 30794189 AAACCCUUUUUAUGGCCAGUGCGUGCUCCGACUCCCAGGGAACGAGGCACUGCCAGGGG--------- ...((((.....((((.(((((.((.(((.........))).))..)))))))))))))--------- ( -20.70, z-score = -0.67, R) >droWil1.scaffold_181130 9576787 67 + 16660200 AAACCCUUUUUAUGGCCCAUUCGUGCCCCGACU-GCAAUAUAUUGCACAUACCAACUCAUAUAUACUA .............(((.(....).))).....(-((((....)))))..................... ( -6.20, z-score = -0.39, R) >consensus AAACCCUUUUUAUGGCCAGUGCGUGAUUCUUCU_GCGGGAGAAAUGGCUGAAGAAAGGGA________ ...((((((((..(((((..........................)))))..))))))))......... ( -7.39 = -9.04 + 1.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:56:55 2011