| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,213,149 – 9,213,246 |
| Length | 97 |
| Max. P | 0.644479 |
| Location | 9,213,149 – 9,213,246 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 84.19 |
| Shannon entropy | 0.25786 |
| G+C content | 0.49534 |
| Mean single sequence MFE | -17.64 |
| Consensus MFE | -11.42 |
| Energy contribution | -12.26 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.644479 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9213149 97 + 23011544 UAAAACCAGUCCAGGAACAAGUUGGAGUGGCUCCAUCACCCUCCCGAAUCCCCCCUUUUGCUUCCUGCUCCAUUUCCAACGCUUUUUG-UUCUGUACG ......(((..((((((...((((((((((.....((........))............((.....)).))).)))))))..))))))-..))).... ( -19.60, z-score = -1.68, R) >droSim1.chr2L 8994266 87 + 22036055 UAAAACCAGUCCAAGAACAAGUUGGAGUGCCUCCACCACCC-----------CCCUUUUGCUUCCUGCUCCAUUUCCAACGCUUUUUGGUUCUGUACG ......(((.(((((((...(((((((((....))).....-----------.......((.....))......))))))..)))))))..))).... ( -19.30, z-score = -2.69, R) >droSec1.super_3 4677315 86 + 7220098 UAAAACCAGUCCAAGAACAAGUUGGAGUGCCUCCACCACCC-----------CCCUUU-GCUUCCUGCUCCAUUUCCAACGCUUUUUGGUUCUGUACG ......(((.(((((((...(((((((((....))).....-----------......-((.....))......))))))..)))))))..))).... ( -19.30, z-score = -2.51, R) >droYak2.chr2L 11884244 86 + 22324452 UAAAACCAGUCCAAGAACAAGUUGGAGUGCCCCCACUACCC-----------CCCAAUCGCUUCCUGCUCCAUUUCCAUUGCUUUUUC-UUCUGUGCG ......(((...(((((.(((((((((((....))).....-----------.......((.....))......))))..)))).)))-))))).... ( -13.50, z-score = -1.41, R) >droEre2.scaffold_4929 9822977 88 + 26641161 UAAAACCAGUUUAAGAACAAGUCGGAGUGCCCCCACUAGCCUC---------CCGAUUUGCUUCCUGCUCCAUUUCCAUUGCGUUUAC-UUCUGUACG ........((...((((((((((((((.((........)))).---------))))))))......((............))......-))))..)). ( -16.50, z-score = -1.94, R) >consensus UAAAACCAGUCCAAGAACAAGUUGGAGUGCCUCCACCACCC___________CCCUUUUGCUUCCUGCUCCAUUUCCAACGCUUUUUG_UUCUGUACG ......(((..((((((...(((((((((....))).......................((.....))......))))))..))))))...))).... (-11.42 = -12.26 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:45 2011